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6SCX

Crystal structure of the catalytic domain of human NUDT12 in complex with 7-methyl-guanosine-5'-triphosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0016787molecular_functionhydrolase activity
A0046872molecular_functionmetal ion binding
B0016787molecular_functionhydrolase activity
B0046872molecular_functionmetal ion binding
C0016787molecular_functionhydrolase activity
C0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue CD A 501
ChainResidue
ACYS284
ACYS287
ACYS302
ACYS307

site_idAC2
Number of Residues3
Detailsbinding site for residue CD A 502
ChainResidue
AALA354
AGLU374
AMGP505

site_idAC3
Number of Residues2
Detailsbinding site for residue CD A 503
ChainResidue
AGLU370
AGLU415

site_idAC4
Number of Residues2
Detailsbinding site for residue CD A 504
ChainResidue
AHIS251
CHIS251

site_idAC5
Number of Residues18
Detailsbinding site for residue MGP A 505
ChainResidue
AASP322
AVAL324
AILE326
AGLN342
AARG344
ATHR351
ACYS352
AALA354
AGLY355
APHE356
ATRP390
AMET397
AALA448
ACD502
AHOH601
BVAL313
BASN315
BTYR318

site_idAC6
Number of Residues4
Detailsbinding site for residue CD B 501
ChainResidue
BCYS284
BCYS287
BCYS302
BCYS307

site_idAC7
Number of Residues3
Detailsbinding site for residue CD B 502
ChainResidue
BALA354
BGLU374
BMGP504

site_idAC8
Number of Residues2
Detailsbinding site for residue CD B 503
ChainResidue
BHIS251
BHIS251

site_idAC9
Number of Residues16
Detailsbinding site for residue MGP B 504
ChainResidue
AVAL313
AASN315
ATYR318
BVAL324
BILE326
BARG344
BTHR351
BCYS352
BALA354
BGLY355
BPHE356
BTRP390
BMET397
BALA448
BCD502
BHOH601

site_idAD1
Number of Residues4
Detailsbinding site for residue CD C 501
ChainResidue
CCYS284
CCYS287
CCYS302
CCYS307

site_idAD2
Number of Residues3
Detailsbinding site for residue CD C 502
ChainResidue
CALA354
CGLU374
CMGP503

site_idAD3
Number of Residues16
Detailsbinding site for residue MGP C 503
ChainResidue
CVAL313
CASN315
CTYR318
CVAL324
CILE326
CARG344
CTHR351
CCYS352
CALA354
CGLY355
CPHE356
CTRP390
CMET397
CALA448
CCD502
CHOH601

Functional Information from PROSITE/UniProt
site_idPS00893
Number of Residues22
DetailsNUDIX_BOX Nudix box signature. GfiepgEtiedAVrREVeEEsG
ChainResidueDetails
AGLY355-GLY376

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsBINDING: BINDING => ECO:0000305|PubMed:31875550, ECO:0007744|PDB:6SCX
ChainResidueDetails
ACYS284
CCYS287
CCYS302
CCYS307
ACYS287
ACYS302
ACYS307
BCYS284
BCYS287
BCYS302
BCYS307
CCYS284

site_idSWS_FT_FI2
Number of Residues15
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:Q9DCN1
ChainResidueDetails
ATYR318
BGLU415
CTYR318
CALA354
CGLU370
CGLU374
CGLU415
AALA354
AGLU370
AGLU374
AGLU415
BTYR318
BALA354
BGLU370
BGLU374

site_idSWS_FT_FI3
Number of Residues6
DetailsMOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:Q9DCN1
ChainResidueDetails
ALYS185
ALYS292
BLYS185
BLYS292
CLYS185
CLYS292

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PDB entries from 2024-10-09

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