6RTD
Dihydro-heme d1 dehydrogenase NirN in complex with DHE
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0006783 | biological_process | heme biosynthetic process |
A | 0009055 | molecular_function | electron transfer activity |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0020037 | molecular_function | heme binding |
A | 0042597 | cellular_component | periplasmic space |
A | 0046872 | molecular_function | metal ion binding |
B | 0006783 | biological_process | heme biosynthetic process |
B | 0009055 | molecular_function | electron transfer activity |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0020037 | molecular_function | heme binding |
B | 0042597 | cellular_component | periplasmic space |
B | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | binding site for residue BU3 A 501 |
Chain | Residue |
A | ASP214 |
A | HOH611 |
A | HOH630 |
B | TRP199 |
B | ASP214 |
site_id | AC2 |
Number of Residues | 15 |
Details | binding site for residue DHE A 502 |
Chain | Residue |
A | ARG164 |
A | ARG189 |
A | ASN190 |
A | HIS323 |
A | PHE369 |
A | PHE370 |
A | ARG372 |
A | HIS417 |
A | TRP432 |
A | TYR461 |
A | HOH659 |
A | ARG36 |
A | HIS147 |
A | GLY149 |
A | LYS151 |
site_id | AC3 |
Number of Residues | 14 |
Details | binding site for residue HEC A 503 |
Chain | Residue |
A | HIS12 |
A | CYS13 |
A | CYS16 |
A | HIS17 |
A | PRO27 |
A | LEU29 |
A | LEU34 |
A | ILE46 |
A | ARG50 |
A | THR53 |
A | GLN54 |
A | MET55 |
A | PHE58 |
A | TYR144 |
site_id | AC4 |
Number of Residues | 16 |
Details | binding site for residue DHE B 501 |
Chain | Residue |
B | ARG36 |
B | HIS147 |
B | GLY148 |
B | GLY149 |
B | LYS151 |
B | ARG164 |
B | ARG189 |
B | ASN190 |
B | TYR240 |
B | HIS323 |
B | PHE369 |
B | PHE370 |
B | ARG372 |
B | HIS417 |
B | TYR461 |
B | HOH601 |
site_id | AC5 |
Number of Residues | 18 |
Details | binding site for Di-peptide HEC B 502 and CYS B 16 |
Chain | Residue |
B | HIS12 |
B | CYS13 |
B | GLN14 |
B | ALA15 |
B | HIS17 |
B | GLY18 |
B | GLY24 |
B | SER25 |
B | GLY26 |
B | PRO27 |
B | LEU29 |
B | ILE46 |
B | ARG50 |
B | THR53 |
B | GLN54 |
B | MET55 |
B | PHE58 |
B | TYR144 |
site_id | AC6 |
Number of Residues | 15 |
Details | binding site for Di-peptide HEC B 502 and CYS B 13 |
Chain | Residue |
B | TYR9 |
B | HIS12 |
B | GLN14 |
B | ALA15 |
B | CYS16 |
B | HIS17 |
B | PRO27 |
B | LEU29 |
B | ILE46 |
B | ARG50 |
B | THR53 |
B | GLN54 |
B | MET55 |
B | PHE58 |
B | TYR144 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | BINDING: covalent => ECO:0000255|PROSITE-ProRule:PRU00433, ECO:0000269|PubMed:31173777, ECO:0007744|PDB:6RTD, ECO:0007744|PDB:6RTE |
Chain | Residue | Details |
A | CYS13 | |
A | CYS16 | |
B | CYS13 | |
B | CYS16 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | BINDING: axial binding residue => ECO:0000255|PROSITE-ProRule:PRU00433, ECO:0000269|PubMed:31173777, ECO:0007744|PDB:6RTD, ECO:0007744|PDB:6RTE |
Chain | Residue | Details |
A | HIS17 | |
B | HIS17 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|PubMed:31173777, ECO:0007744|PDB:6RTD, ECO:0007744|PDB:6RTE |
Chain | Residue | Details |
A | ARG50 | |
B | ARG50 |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | BINDING: axial binding residue => ECO:0000269|PubMed:31173777, ECO:0007744|PDB:6RTD, ECO:0007744|PDB:6RTE |
Chain | Residue | Details |
A | MET55 | |
B | MET55 |
site_id | SWS_FT_FI5 |
Number of Residues | 2 |
Details | BINDING: proximal binding residue => ECO:0000269|PubMed:31173777, ECO:0007744|PDB:6RTD |
Chain | Residue | Details |
A | HIS147 | |
B | HIS147 |
site_id | SWS_FT_FI6 |
Number of Residues | 14 |
Details | BINDING: BINDING => ECO:0000269|PubMed:31173777, ECO:0007744|PDB:6RTD |
Chain | Residue | Details |
A | GLY149 | |
B | ARG164 | |
B | ARG189 | |
B | ASN190 | |
B | ARG372 | |
B | HIS417 | |
A | LYS151 | |
A | ARG164 | |
A | ARG189 | |
A | ASN190 | |
A | ARG372 | |
A | HIS417 | |
B | GLY149 | |
B | LYS151 |
site_id | SWS_FT_FI7 |
Number of Residues | 2 |
Details | BINDING: distal binding residue => ECO:0000269|PubMed:31173777, ECO:0007744|PDB:6RTD |
Chain | Residue | Details |
A | HIS323 | |
B | HIS323 |