6RT6
The YTH domain of YTHDC1 protein in complex with GGm6AC oligonucleotide
Functional Information from GO Data
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 B 601 |
| Chain | Residue |
| B | GLY344 |
| B | SER346 |
| B | LYS347 |
| B | HOH704 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 C 601 |
| Chain | Residue |
| C | HOH787 |
| C | ARG451 |
| C | GLU452 |
| C | HOH720 |
| C | HOH721 |
| C | HOH737 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 C 602 |
| Chain | Residue |
| B | LYS386 |
| B | GLN478 |
| B | GLU479 |
| C | GLY344 |
| C | LYS347 |
| C | HOH761 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 C 603 |
| Chain | Residue |
| C | SER419 |
| C | HIS420 |
| C | HIS421 |
| C | ARG451 |
| C | HOH709 |
| C | HOH712 |
| site_id | AC5 |
| Number of Residues | 12 |
| Details | binding site for Di-nucleotide 6MZ E 1 and C E 2 |
| Chain | Residue |
| B | LYS361 |
| B | SER362 |
| B | ASN363 |
| B | ASN367 |
| B | TRP377 |
| B | SER378 |
| B | TRP428 |
| B | LEU439 |
| B | ILE473 |
| B | GLY474 |
| B | ARG475 |
| B | ASP476 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"31670957","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6RT4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT6","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT7","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"25242552","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"31670957","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6RT4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT6","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT7","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"25242552","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"20068231","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 137 |
| Details | Domain: {"description":"YTH","evidences":[{"source":"PROSITE-ProRule","id":"PRU00225","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18669648","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"20068231","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
