6RT4
The YTH domain of YTHDC1 protein in complex with m6ACU oligonucleotide
Functional Information from GO Data
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 B 601 |
| Chain | Residue |
| B | GLY344 |
| B | SER346 |
| B | LYS347 |
| B | HOH703 |
| B | HOH708 |
| site_id | AC2 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 B 602 |
| Chain | Residue |
| B | ALA432 |
| B | HOH711 |
| B | HOH745 |
| A | HIS505 |
| B | ASN363 |
| B | ARG404 |
| B | PRO431 |
| site_id | AC3 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 A 601 |
| Chain | Residue |
| A | ARG451 |
| A | GLU452 |
| A | HOH712 |
| A | HOH727 |
| A | HOH749 |
| A | HOH765 |
| A | HOH818 |
| site_id | AC4 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 A 602 |
| Chain | Residue |
| A | GLY344 |
| A | LYS347 |
| A | HOH708 |
| A | HOH785 |
| B | LYS386 |
| B | GLN478 |
| B | GLU479 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 A 603 |
| Chain | Residue |
| A | HIS420 |
| A | HIS421 |
| A | ARG451 |
| A | HOH780 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 A 604 |
| Chain | Residue |
| A | ASN363 |
| A | PRO431 |
| A | ALA432 |
| site_id | AC7 |
| Number of Residues | 20 |
| Details | binding site for Di-nucleotide 6MZ D 1 and C D 2 |
| Chain | Residue |
| B | LYS361 |
| B | SER362 |
| B | ASN363 |
| B | ASN367 |
| B | TRP377 |
| B | SER378 |
| B | LEU380 |
| B | ARG404 |
| B | TRP428 |
| B | MET434 |
| B | ILE473 |
| B | GLY474 |
| B | ARG475 |
| B | ASP476 |
| B | HOH725 |
| B | HOH736 |
| D | U3 |
| D | HOH102 |
| D | HOH103 |
| D | HOH104 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7 |
| Chain | Residue | Details |
| B | LYS361 | |
| B | ASP476 | |
| A | LYS361 | |
| A | ASP476 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:25242552, ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7 |
| Chain | Residue | Details |
| B | TRP377 | |
| A | TRP377 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:25242552 |
| Chain | Residue | Details |
| B | TRP428 | |
| A | TRP428 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163 |
| Chain | Residue | Details |
| B | SER424 | |
| A | SER424 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 2 |
| Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:20068231 |
| Chain | Residue | Details |
| B | SER435 | |
| A | SER435 |
