6RO2
The crystal structure of a complex between the LlFpg protein, a THF-DNA and an inhibitor
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003676 | molecular_function | nucleic acid binding |
| A | 0003677 | molecular_function | DNA binding |
| A | 0003684 | molecular_function | damaged DNA binding |
| A | 0003690 | molecular_function | double-stranded DNA binding |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0003906 | molecular_function | DNA-(apurinic or apyrimidinic site) endonuclease activity |
| A | 0006281 | biological_process | DNA repair |
| A | 0006284 | biological_process | base-excision repair |
| A | 0006974 | biological_process | DNA damage response |
| A | 0008270 | molecular_function | zinc ion binding |
| A | 0008534 | molecular_function | oxidized purine nucleobase lesion DNA N-glycosylase activity |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
| A | 0016799 | molecular_function | hydrolase activity, hydrolyzing N-glycosyl compounds |
| A | 0016829 | molecular_function | lyase activity |
| A | 0019104 | molecular_function | DNA N-glycosylase activity |
| A | 0034039 | molecular_function | 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0140078 | molecular_function | class I DNA-(apurinic or apyrimidinic site) endonuclease activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 9 |
| Details | binding site for residue GOL A 301 |
| Chain | Residue |
| A | TYR58 |
| A | HIS72 |
| A | ARG74 |
| A | THR113 |
| A | GLU115 |
| A | LYS129 |
| A | CYS248 |
| B | DT9 |
| B | DT10 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | binding site for residue 2ON A 302 |
| Chain | Residue |
| A | TRP179 |
| A | LEU180 |
| A | LYS182 |
| A | CYS268 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | binding site for residue 2ON A 303 |
| Chain | Residue |
| A | CYS248 |
| B | DT10 |
| B | DC11 |
| C | DA21 |
| C | DA22 |
| site_id | AC4 |
| Number of Residues | 9 |
| Details | binding site for residue 2ON B 101 |
| Chain | Residue |
| A | LYS57 |
| A | LEU161 |
| A | ARG260 |
| B | DT9 |
| B | DT10 |
| B | HOH205 |
| B | HOH206 |
| B | HOH215 |
| B | HOH217 |
Functional Information from PROSITE/UniProt
| site_id | PS01242 |
| Number of Residues | 25 |
| Details | ZF_FPG_1 Zinc finger FPG-type signature. Csr..CGaeIqkikvag....RGthFCpvCQ |
| Chain | Residue | Details |
| A | CYS245-GLN269 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 34 |
| Details | Zinc finger: {"description":"FPG-type"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 28 |
| Details | Region: {"description":"DNA-binding"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 1 |
| Details | Active site: {"description":"Schiff-base intermediate with DNA","evidences":[{"evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 1 |
| Details | Active site: {"description":"Proton donor","evidences":[{"evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 1 |
| Details | Active site: {"description":"Proton donor; for beta-elimination activity","evidences":[{"evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 1 |
| Details | Active site: {"description":"Proton donor; for delta-elimination activity","evidences":[{"evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 2 |
| Details | Binding site: {} |
| Chain | Residue | Details |
