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6RLG

Crystal structure of LdtMt2 from Mycobacterium tuberculosis

Functional Information from GO Data
ChainGOidnamespacecontents
A0005886cellular_componentplasma membrane
A0008360biological_processregulation of cell shape
A0009252biological_processpeptidoglycan biosynthetic process
A0016740molecular_functiontransferase activity
A0016746molecular_functionacyltransferase activity
A0018104biological_processpeptidoglycan-protein cross-linking
A0046872molecular_functionmetal ion binding
A0071555biological_processcell wall organization
A0071972molecular_functionpeptidoglycan L,D-transpeptidase activity
B0005886cellular_componentplasma membrane
B0008360biological_processregulation of cell shape
B0009252biological_processpeptidoglycan biosynthetic process
B0016740molecular_functiontransferase activity
B0016746molecular_functionacyltransferase activity
B0018104biological_processpeptidoglycan-protein cross-linking
B0046872molecular_functionmetal ion binding
B0071555biological_processcell wall organization
B0071972molecular_functionpeptidoglycan L,D-transpeptidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue NO3 A 501
ChainResidue
AASP108
AARG111
AHOH637

site_idAC2
Number of Residues3
Detailsbinding site for residue TRS A 502
ChainResidue
AASP160
AGLY161
AHOH848

site_idAC3
Number of Residues3
Detailsbinding site for residue EDO A 503
ChainResidue
AHIS214
APHE215
AHOH869

site_idAC4
Number of Residues8
Detailsbinding site for residue EDO A 504
ChainResidue
ASER306
APRO311
AHOH602
AHOH861
BASN95
BASN97
BARG99
BARG122

site_idAC5
Number of Residues3
Detailsbinding site for residue EDO A 505
ChainResidue
AHOH601
AHOH773
BSER65

site_idAC6
Number of Residues5
Detailsbinding site for residue EDO A 506
ChainResidue
AVAL75
AALA77
APRO78
AGLN117
ALEU118

site_idAC7
Number of Residues9
Detailsbinding site for residue EDO A 507
ChainResidue
AASN95
AASN97
AARG99
AARG122
AHOH603
AHOH904
BSER306
BGLY309
BPRO311

site_idAC8
Number of Residues7
Detailsbinding site for residue EDO A 508
ChainResidue
AASN95
AVAL101
AGLU116
AGLY119
AARG122
ATYR124
AHOH607

site_idAC9
Number of Residues4
Detailsbinding site for residue EDO A 509
ChainResidue
AGLN140
ATRP364
AHIS368
AHOH622

site_idAD1
Number of Residues7
Detailsbinding site for residue EDO A 510
ChainResidue
ASER65
ATHR74
AALA77
APRO78
AVAL79
AHOH754
AHOH832

site_idAD2
Number of Residues3
Detailsbinding site for residue NA A 511
ChainResidue
AILE188
ALYS189
AILE190

site_idAD3
Number of Residues3
Detailsbinding site for residue NA A 512
ChainResidue
AGLY250
AASP251
ALYS370

site_idAD4
Number of Residues5
Detailsbinding site for residue EDO A 513
ChainResidue
ATYR318
ATHR320
AHIS352
AHOH761
AHOH851

site_idAD5
Number of Residues10
Detailsbinding site for residue EDO A 514
ChainResidue
ATYR318
ASER331
AGLY332
AHIS352
AGLY353
AHOH613
AHOH619
AHOH627
AHOH728
AHOH903

site_idAD6
Number of Residues5
Detailsbinding site for residue EDO A 515
ChainResidue
ATYR201
AGLY387
AILE388
AHOH732
AHOH876

site_idAD7
Number of Residues3
Detailsbinding site for residue NO3 B 501
ChainResidue
BASP108
BARG111
BHOH737

site_idAD8
Number of Residues6
Detailsbinding site for residue TRS B 502
ChainResidue
BGLU213
BHIS214
BPHE215
BILE291
BTRP394
BHOH812

site_idAD9
Number of Residues6
Detailsbinding site for residue EDO B 503
ChainResidue
BVAL75
BALA77
BPRO78
BGLN117
BLEU118
BHOH776

site_idAE1
Number of Residues5
Detailsbinding site for residue EDO B 504
ChainResidue
BSER65
BTHR74
BALA77
BPRO78
BHOH784

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor/acceptor => ECO:0000255|PROSITE-ProRule:PRU01373, ECO:0000305|PubMed:23519417
ChainResidueDetails
AHIS336
BHIS336

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Nucleophile => ECO:0000255|PROSITE-ProRule:PRU01373, ECO:0000269|PubMed:23519417
ChainResidueDetails
ACYS354
BCYS354

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING:
ChainResidueDetails
AGLY236
BASP232
BGLU235
BGLY236
AASP232
AGLU235

site_idSWS_FT_FI4
Number of Residues6
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
BSER331
BASN356
ATYR318
ASER331
AASN356
BTYR318

site_idSWS_FT_FI5
Number of Residues2
DetailsSITE: Binds to carbapenem drug (covalent)
ChainResidueDetails
ACYS354
BCYS354

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PDB entries from 2024-05-29

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