6RJN
Crystal structure of a Fungal Catalase at 2.3 Angstroms
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0004096 | molecular_function | catalase activity |
A | 0004601 | molecular_function | peroxidase activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0005739 | cellular_component | mitochondrion |
A | 0005777 | cellular_component | peroxisome |
A | 0006979 | biological_process | response to oxidative stress |
A | 0020037 | molecular_function | heme binding |
A | 0042542 | biological_process | response to hydrogen peroxide |
A | 0042744 | biological_process | hydrogen peroxide catabolic process |
A | 0046872 | molecular_function | metal ion binding |
A | 0098869 | biological_process | cellular oxidant detoxification |
B | 0000166 | molecular_function | nucleotide binding |
B | 0004096 | molecular_function | catalase activity |
B | 0004601 | molecular_function | peroxidase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0005739 | cellular_component | mitochondrion |
B | 0005777 | cellular_component | peroxisome |
B | 0006979 | biological_process | response to oxidative stress |
B | 0020037 | molecular_function | heme binding |
B | 0042542 | biological_process | response to hydrogen peroxide |
B | 0042744 | biological_process | hydrogen peroxide catabolic process |
B | 0046872 | molecular_function | metal ion binding |
B | 0098869 | biological_process | cellular oxidant detoxification |
C | 0000166 | molecular_function | nucleotide binding |
C | 0004096 | molecular_function | catalase activity |
C | 0004601 | molecular_function | peroxidase activity |
C | 0005737 | cellular_component | cytoplasm |
C | 0005739 | cellular_component | mitochondrion |
C | 0005777 | cellular_component | peroxisome |
C | 0006979 | biological_process | response to oxidative stress |
C | 0020037 | molecular_function | heme binding |
C | 0042542 | biological_process | response to hydrogen peroxide |
C | 0042744 | biological_process | hydrogen peroxide catabolic process |
C | 0046872 | molecular_function | metal ion binding |
C | 0098869 | biological_process | cellular oxidant detoxification |
D | 0000166 | molecular_function | nucleotide binding |
D | 0004096 | molecular_function | catalase activity |
D | 0004601 | molecular_function | peroxidase activity |
D | 0005737 | cellular_component | cytoplasm |
D | 0005739 | cellular_component | mitochondrion |
D | 0005777 | cellular_component | peroxisome |
D | 0006979 | biological_process | response to oxidative stress |
D | 0020037 | molecular_function | heme binding |
D | 0042542 | biological_process | response to hydrogen peroxide |
D | 0042744 | biological_process | hydrogen peroxide catabolic process |
D | 0046872 | molecular_function | metal ion binding |
D | 0098869 | biological_process | cellular oxidant detoxification |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 25 |
Details | binding site for residue HEM A 601 |
Chain | Residue |
A | ARG63 |
A | PHE152 |
A | HIS209 |
A | LEU290 |
A | PHE325 |
A | VAL341 |
A | SER344 |
A | ARG345 |
A | SER348 |
A | TYR349 |
A | THR352 |
A | VAL64 |
A | HIS353 |
A | ARG356 |
A | HOH736 |
A | HOH742 |
A | HOH779 |
D | ASP56 |
A | VAL65 |
A | HIS66 |
A | ARG103 |
A | GLY122 |
A | VAL137 |
A | TYR138 |
A | ASN139 |
site_id | AC2 |
Number of Residues | 22 |
Details | binding site for residue NDP A 602 |
Chain | Residue |
A | PRO142 |
A | HIS185 |
A | SER192 |
A | ARG194 |
A | ASN204 |
A | TYR206 |
A | HIS226 |
A | LYS228 |
A | TRP294 |
A | PRO295 |
A | HIS296 |
A | GLN441 |
A | ALA444 |
A | LEU445 |
A | VAL448 |
A | PHE449 |
A | GLN455 |
A | HOH724 |
A | HOH740 |
A | HOH749 |
A | HOH758 |
A | HOH763 |
site_id | AC3 |
Number of Residues | 5 |
Details | binding site for residue GOL A 603 |
Chain | Residue |
A | TRP446 |
A | LYS447 |
A | GLU488 |
A | HOH813 |
A | HOH904 |
site_id | AC4 |
Number of Residues | 2 |
Details | binding site for residue GOL A 604 |
Chain | Residue |
A | CYS368 |
A | ASN386 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue GOL A 605 |
Chain | Residue |
A | GLU22 |
A | GLN44 |
B | LYS212 |
B | TYR214 |
B | GLU416 |
site_id | AC6 |
Number of Residues | 6 |
Details | binding site for residue GOL A 606 |
Chain | Residue |
A | LYS212 |
A | TYR214 |
A | PRO336 |
A | GLU416 |
B | GLU22 |
B | GLN44 |
site_id | AC7 |
Number of Residues | 5 |
Details | binding site for residue SO4 A 607 |
Chain | Residue |
A | THR375 |
A | MET378 |
A | ASN386 |
A | ASN388 |
A | HOH741 |
site_id | AC8 |
Number of Residues | 6 |
Details | binding site for residue SO4 A 608 |
Chain | Residue |
A | ARG147 |
A | HIS427 |
A | TRP428 |
A | GLY429 |
A | LEU432 |
A | HOH719 |
site_id | AC9 |
Number of Residues | 2 |
Details | binding site for residue CL A 609 |
Chain | Residue |
A | ARG57 |
C | ARG57 |
site_id | AD1 |
Number of Residues | 4 |
Details | binding site for residue CL A 610 |
Chain | Residue |
A | GLY454 |
A | ARG457 |
C | ARG457 |
C | GOL605 |
site_id | AD2 |
Number of Residues | 6 |
Details | binding site for residue K A 611 |
Chain | Residue |
A | PRO142 |
A | GLY208 |
A | GLN224 |
A | LYS292 |
A | HOH801 |
A | HOH880 |
site_id | AD3 |
Number of Residues | 6 |
Details | binding site for residue NA A 612 |
Chain | Residue |
A | ASN28 |
A | ASN34 |
A | PRO36 |
A | HOH788 |
A | HOH917 |
A | HOH943 |
site_id | AD4 |
Number of Residues | 5 |
Details | binding site for residue K B 601 |
Chain | Residue |
A | GLN377 |
A | MET378 |
B | SER51 |
B | PHE55 |
B | HOH832 |
site_id | AD5 |
Number of Residues | 25 |
Details | binding site for residue HEM B 602 |
Chain | Residue |
B | ARG63 |
B | VAL64 |
B | VAL65 |
B | HIS66 |
B | ARG103 |
B | GLY122 |
B | SER124 |
B | TYR138 |
B | ASN139 |
B | PHE152 |
B | HIS209 |
B | LEU290 |
B | PHE325 |
B | VAL341 |
B | SER344 |
B | ARG345 |
B | SER348 |
B | TYR349 |
B | THR352 |
B | HIS353 |
B | ARG356 |
B | HOH747 |
B | HOH767 |
B | HOH777 |
C | ASP56 |
site_id | AD6 |
Number of Residues | 21 |
Details | binding site for residue NDP B 603 |
Chain | Residue |
B | HIS185 |
B | ARG194 |
B | ASN204 |
B | TYR206 |
B | HIS226 |
B | LYS228 |
B | VAL293 |
B | TRP294 |
B | PRO295 |
B | HIS296 |
B | GLN441 |
B | LEU445 |
B | VAL448 |
B | PHE449 |
B | GLN455 |
B | GOL607 |
B | HOH707 |
B | HOH782 |
B | HOH802 |
B | HOH839 |
B | HOH865 |
site_id | AD7 |
Number of Residues | 4 |
Details | binding site for residue GOL B 604 |
Chain | Residue |
B | ARG118 |
B | ASN238 |
B | ALA241 |
B | GLY242 |
site_id | AD8 |
Number of Residues | 4 |
Details | binding site for residue GOL B 605 |
Chain | Residue |
B | ASP169 |
B | ASN171 |
B | HOH719 |
D | GOL606 |
site_id | AD9 |
Number of Residues | 6 |
Details | binding site for residue GOL B 606 |
Chain | Residue |
B | ASP193 |
B | ASN235 |
B | ASN237 |
B | GLU240 |
B | GLN455 |
B | HOH862 |
site_id | AE1 |
Number of Residues | 4 |
Details | binding site for residue GOL B 607 |
Chain | Residue |
B | PRO295 |
B | GLN441 |
B | ALA444 |
B | NDP603 |
site_id | AE2 |
Number of Residues | 6 |
Details | binding site for residue PEG B 608 |
Chain | Residue |
B | GLN279 |
B | LYS282 |
B | GLN283 |
B | ASP298 |
C | PEG608 |
C | HOH838 |
site_id | AE3 |
Number of Residues | 2 |
Details | binding site for residue CL B 609 |
Chain | Residue |
B | ARG57 |
D | ARG57 |
site_id | AE4 |
Number of Residues | 3 |
Details | binding site for residue CL B 610 |
Chain | Residue |
B | GLY454 |
B | ARG457 |
D | HOH851 |
site_id | AE5 |
Number of Residues | 6 |
Details | binding site for residue K B 611 |
Chain | Residue |
B | PRO142 |
B | GLY208 |
B | GLN224 |
B | LYS292 |
B | HOH750 |
B | HOH819 |
site_id | AE6 |
Number of Residues | 6 |
Details | binding site for residue NA B 612 |
Chain | Residue |
B | ASN28 |
B | ASN34 |
B | PRO36 |
B | HOH762 |
B | HOH967 |
B | HOH994 |
site_id | AE7 |
Number of Residues | 4 |
Details | binding site for residue K B 613 |
Chain | Residue |
B | SER51 |
B | HOH959 |
C | SER150 |
C | HOH805 |
site_id | AE8 |
Number of Residues | 25 |
Details | binding site for residue HEM C 601 |
Chain | Residue |
B | ASP56 |
C | ARG63 |
C | VAL64 |
C | VAL65 |
C | HIS66 |
C | ARG103 |
C | GLY122 |
C | VAL137 |
C | TYR138 |
C | ASN139 |
C | PHE152 |
C | HIS209 |
C | PHE325 |
C | VAL341 |
C | SER344 |
C | ARG345 |
C | SER348 |
C | TYR349 |
C | THR352 |
C | HIS353 |
C | ARG356 |
C | HOH710 |
C | HOH756 |
C | HOH771 |
C | HOH777 |
site_id | AE9 |
Number of Residues | 22 |
Details | binding site for residue NDP C 602 |
Chain | Residue |
C | HIS185 |
C | TYR189 |
C | SER192 |
C | ARG194 |
C | ASN204 |
C | TYR206 |
C | HIS226 |
C | LYS228 |
C | VAL293 |
C | TRP294 |
C | PRO295 |
C | HIS296 |
C | GLN441 |
C | ALA444 |
C | LEU445 |
C | VAL448 |
C | PHE449 |
C | LYS451 |
C | GLN455 |
C | HOH706 |
C | HOH740 |
C | HOH867 |
site_id | AF1 |
Number of Residues | 5 |
Details | binding site for residue GOL C 603 |
Chain | Residue |
B | ALA245 |
C | GLY112 |
C | ALA245 |
C | PRO249 |
C | HOH882 |
site_id | AF2 |
Number of Residues | 9 |
Details | binding site for residue GOL C 604 |
Chain | Residue |
C | PRO376 |
C | THR392 |
C | PRO393 |
C | TYR395 |
C | LYS396 |
C | SER397 |
C | CYS400 |
C | PHE402 |
D | TRP7 |
site_id | AF3 |
Number of Residues | 6 |
Details | binding site for residue GOL C 605 |
Chain | Residue |
A | GLY454 |
A | CL610 |
C | ARG457 |
C | ASN458 |
C | HIS461 |
C | GLU496 |
site_id | AF4 |
Number of Residues | 6 |
Details | binding site for residue GOL C 606 |
Chain | Residue |
C | ALA117 |
C | ARG118 |
C | ASN238 |
C | ALA241 |
C | GLY242 |
C | HOH791 |
site_id | AF5 |
Number of Residues | 5 |
Details | binding site for residue GOL C 607 |
Chain | Residue |
C | GLN362 |
C | CYS368 |
C | PRO369 |
C | ASN386 |
C | HOH701 |
site_id | AF6 |
Number of Residues | 4 |
Details | binding site for residue PEG C 608 |
Chain | Residue |
B | LYS282 |
B | PEG608 |
C | GLN279 |
C | GLN283 |
site_id | AF7 |
Number of Residues | 6 |
Details | binding site for residue K C 609 |
Chain | Residue |
C | PRO142 |
C | GLY208 |
C | GLN224 |
C | LYS292 |
C | HOH780 |
C | HOH869 |
site_id | AF8 |
Number of Residues | 6 |
Details | binding site for residue NA C 610 |
Chain | Residue |
C | ASN28 |
C | ASN34 |
C | PRO36 |
C | HOH815 |
C | HOH935 |
C | HOH976 |
site_id | AF9 |
Number of Residues | 5 |
Details | binding site for residue K C 611 |
Chain | Residue |
C | SER51 |
C | PHE55 |
C | HOH772 |
D | GLN377 |
D | MET378 |
site_id | AG1 |
Number of Residues | 9 |
Details | binding site for residue GOL D 601 |
Chain | Residue |
A | ARG147 |
A | LYS292 |
A | TRP428 |
A | ASP438 |
A | HOH719 |
A | HOH786 |
D | ASN33 |
D | ALA35 |
D | PRO36 |
site_id | AG2 |
Number of Residues | 8 |
Details | binding site for residue GOL D 602 |
Chain | Residue |
A | GLY112 |
A | ALA245 |
A | PRO249 |
D | GLY112 |
D | ALA245 |
D | PRO249 |
D | HOH830 |
D | HOH882 |
site_id | AG3 |
Number of Residues | 9 |
Details | binding site for residue GOL D 603 |
Chain | Residue |
C | HIS54 |
D | ASN360 |
D | THR375 |
D | MET378 |
D | ASN386 |
D | ASN388 |
D | LEU389 |
D | HOH701 |
D | HOH816 |
site_id | AG4 |
Number of Residues | 24 |
Details | binding site for residue HEM D 604 |
Chain | Residue |
A | ASP56 |
D | ARG63 |
D | VAL64 |
D | VAL65 |
D | HIS66 |
D | ARG103 |
D | GLY122 |
D | TYR138 |
D | ASN139 |
D | PHE152 |
D | SER207 |
D | HIS209 |
D | PHE325 |
D | VAL341 |
D | SER344 |
D | ARG345 |
D | SER348 |
D | TYR349 |
D | THR352 |
D | HIS353 |
D | ARG356 |
D | HOH721 |
D | HOH744 |
D | HOH761 |
site_id | AG5 |
Number of Residues | 24 |
Details | binding site for residue NDP D 605 |
Chain | Residue |
D | PRO142 |
D | HIS185 |
D | SER192 |
D | ARG194 |
D | ASN204 |
D | TYR206 |
D | HIS226 |
D | LYS228 |
D | VAL293 |
D | TRP294 |
D | PRO295 |
D | HIS296 |
D | GLN441 |
D | ALA444 |
D | LEU445 |
D | VAL448 |
D | PHE449 |
D | LYS451 |
D | GLN455 |
D | HOH710 |
D | HOH723 |
D | HOH802 |
D | HOH880 |
D | HOH888 |
site_id | AG6 |
Number of Residues | 2 |
Details | binding site for residue GOL D 606 |
Chain | Residue |
B | GOL605 |
D | PHE399 |
site_id | AG7 |
Number of Residues | 6 |
Details | binding site for residue K D 608 |
Chain | Residue |
D | PRO142 |
D | GLY208 |
D | GLN224 |
D | LYS292 |
D | HOH791 |
D | HOH834 |
site_id | AG8 |
Number of Residues | 7 |
Details | binding site for residue NA D 609 |
Chain | Residue |
D | ASN28 |
D | ASN34 |
D | ALA35 |
D | PRO36 |
D | HOH750 |
D | HOH954 |
D | HOH961 |
Functional Information from PROSITE/UniProt