6RG0
Structure of pdxj
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0008615 | biological_process | pyridoxine biosynthetic process |
A | 0016740 | molecular_function | transferase activity |
A | 0016769 | molecular_function | transferase activity, transferring nitrogenous groups |
A | 0033856 | molecular_function | pyridoxine 5'-phosphate synthase activity |
A | 0042802 | molecular_function | identical protein binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0008615 | biological_process | pyridoxine biosynthetic process |
B | 0016740 | molecular_function | transferase activity |
B | 0016769 | molecular_function | transferase activity, transferring nitrogenous groups |
B | 0033856 | molecular_function | pyridoxine 5'-phosphate synthase activity |
B | 0042802 | molecular_function | identical protein binding |
C | 0005737 | cellular_component | cytoplasm |
C | 0005829 | cellular_component | cytosol |
C | 0008615 | biological_process | pyridoxine biosynthetic process |
C | 0016740 | molecular_function | transferase activity |
C | 0016769 | molecular_function | transferase activity, transferring nitrogenous groups |
C | 0033856 | molecular_function | pyridoxine 5'-phosphate synthase activity |
C | 0042802 | molecular_function | identical protein binding |
D | 0005737 | cellular_component | cytoplasm |
D | 0005829 | cellular_component | cytosol |
D | 0008615 | biological_process | pyridoxine biosynthetic process |
D | 0016740 | molecular_function | transferase activity |
D | 0016769 | molecular_function | transferase activity, transferring nitrogenous groups |
D | 0033856 | molecular_function | pyridoxine 5'-phosphate synthase activity |
D | 0042802 | molecular_function | identical protein binding |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 8 |
Details | ACT_SITE: Proton acceptor |
Chain | Residue | Details |
A | HIS58 | |
A | GLU85 | |
B | HIS58 | |
B | GLU85 | |
C | HIS58 | |
C | GLU85 | |
D | HIS58 | |
D | GLU85 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | ACT_SITE: Proton donor |
Chain | Residue | Details |
A | HIS206 | |
B | HIS206 | |
C | HIS206 | |
D | HIS206 |
site_id | SWS_FT_FI3 |
Number of Residues | 32 |
Details | BINDING: |
Chain | Residue | Details |
A | ASN22 | |
B | ASP24 | |
B | ARG33 | |
B | ARG60 | |
B | HIS65 | |
B | THR115 | |
B | GLY207 | |
B | GLY228 | |
C | ASN22 | |
C | ASP24 | |
C | ARG33 | |
A | ASP24 | |
C | ARG60 | |
C | HIS65 | |
C | THR115 | |
C | GLY207 | |
C | GLY228 | |
D | ASN22 | |
D | ASP24 | |
D | ARG33 | |
D | ARG60 | |
D | HIS65 | |
A | ARG33 | |
D | THR115 | |
D | GLY207 | |
D | GLY228 | |
A | ARG60 | |
A | HIS65 | |
A | THR115 | |
A | GLY207 | |
A | GLY228 | |
B | ASN22 |
site_id | SWS_FT_FI4 |
Number of Residues | 4 |
Details | SITE: Transition state stabilizer |
Chain | Residue | Details |
A | GLU166 | |
B | GLU166 | |
C | GLU166 | |
D | GLU166 |
Catalytic Information from CSA
site_id | MCSA1 |
Number of Residues | 9 |
Details | M-CSA 243 |
Chain | Residue | Details |
A | ASN22 | electrostatic stabiliser, hydrogen bond donor |
A | HIS25 | attractive charge-charge interaction, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
A | HIS58 | attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
A | ARG60 | attractive charge-charge interaction, electrostatic stabiliser, increase acidity, increase basicity |
A | ARG64 | attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor, increase acidity, increase basicity |
A | GLU85 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay |
A | THR116 | electrostatic stabiliser, hydrogen bond acceptor |
A | GLU166 | electrostatic stabiliser, hydrogen bond acceptor |
A | HIS206 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
site_id | MCSA2 |
Number of Residues | 9 |
Details | M-CSA 243 |
Chain | Residue | Details |
B | ASN22 | electrostatic stabiliser, hydrogen bond donor |
B | HIS25 | attractive charge-charge interaction, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
B | HIS58 | attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
B | ARG60 | attractive charge-charge interaction, electrostatic stabiliser, increase acidity, increase basicity |
B | ARG64 | attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor, increase acidity, increase basicity |
B | GLU85 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay |
B | THR116 | electrostatic stabiliser, hydrogen bond acceptor |
B | GLU166 | electrostatic stabiliser, hydrogen bond acceptor |
B | HIS206 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
site_id | MCSA3 |
Number of Residues | 9 |
Details | M-CSA 243 |
Chain | Residue | Details |
C | ASN22 | electrostatic stabiliser, hydrogen bond donor |
C | HIS25 | attractive charge-charge interaction, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
C | HIS58 | attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
C | ARG60 | attractive charge-charge interaction, electrostatic stabiliser, increase acidity, increase basicity |
C | ARG64 | attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor, increase acidity, increase basicity |
C | GLU85 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay |
C | THR116 | electrostatic stabiliser, hydrogen bond acceptor |
C | GLU166 | electrostatic stabiliser, hydrogen bond acceptor |
C | HIS206 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
site_id | MCSA4 |
Number of Residues | 9 |
Details | M-CSA 243 |
Chain | Residue | Details |
D | ASN22 | electrostatic stabiliser, hydrogen bond donor |
D | HIS25 | attractive charge-charge interaction, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
D | HIS58 | attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
D | ARG60 | attractive charge-charge interaction, electrostatic stabiliser, increase acidity, increase basicity |
D | ARG64 | attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor, increase acidity, increase basicity |
D | GLU85 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay |
D | THR116 | electrostatic stabiliser, hydrogen bond acceptor |
D | GLU166 | electrostatic stabiliser, hydrogen bond acceptor |
D | HIS206 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |