6R8O
Human Cyclophilin D in complex with 1-(((2R,3S,6R)-3-hydroxy-2,3,4,6-tetrahydro-1H-2,6-methanobenzo[c][1,5]oxazocin-8-yl)methyl)-3-(2-((R)-2-(2-(methylthio)phenyl)pyrrolidin-1-yl)-2-oxoethyl)urea
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000413 | biological_process | protein peptidyl-prolyl isomerization |
| A | 0003755 | molecular_function | peptidyl-prolyl cis-trans isomerase activity |
| A | 0006457 | biological_process | protein folding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 7 |
| Details | binding site for residue PG4 A 301 |
| Chain | Residue |
| A | ILE120 |
| A | VAL135 |
| A | PRO137 |
| A | HIS173 |
| A | HOH547 |
| A | HOH553 |
| A | HOH554 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 A 302 |
| Chain | Residue |
| A | GLY177 |
| A | MET178 |
| A | ASP179 |
| A | HOH408 |
| A | LYS73 |
| A | GLU176 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | binding site for residue PO4 A 303 |
| Chain | Residue |
| A | SER189 |
| A | LYS190 |
| A | HOH404 |
| site_id | AC4 |
| Number of Residues | 24 |
| Details | binding site for residue JV2 A 304 |
| Chain | Residue |
| A | ARG97 |
| A | ARG97 |
| A | PHE102 |
| A | MET103 |
| A | GLN105 |
| A | GLY114 |
| A | THR115 |
| A | THR115 |
| A | GLY116 |
| A | GLY117 |
| A | SER123 |
| A | ARG124 |
| A | ALA143 |
| A | ASN144 |
| A | THR149 |
| A | GLY151 |
| A | GLN153 |
| A | PHE155 |
| A | HIS168 |
| A | LYS190 |
| A | SER191 |
| A | HOH458 |
| A | HOH481 |
| A | HOH486 |
Functional Information from PROSITE/UniProt
| site_id | PS00170 |
| Number of Residues | 18 |
| Details | CSA_PPIASE_1 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. YkgStFHRVIpsFMcQAG |
| Chain | Residue | Details |
| A | TYR90-GLY107 | |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 156 |
| Details | Domain: {"description":"PPIase cyclophilin-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU00156","evidenceCode":"ECO:0000255"}]} |
| site_id | SWS_FT_FI2 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"UniProtKB","id":"Q99KR7","evidenceCode":"ECO:0000250"}]} |
| site_id | SWS_FT_FI3 |
| Number of Residues | 3 |
| Details | Modified residue: {"description":"N6-succinyllysine","evidences":[{"source":"UniProtKB","id":"Q99KR7","evidenceCode":"ECO:0000250"}]} |
| site_id | SWS_FT_FI4 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"N6-acetyllysine","evidences":[{"source":"UniProtKB","id":"Q99KR7","evidenceCode":"ECO:0000250"}]} |
| site_id | SWS_FT_FI5 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"S-nitrosocysteine","evidences":[{"source":"UniProtKB","id":"Q99KR7","evidenceCode":"ECO:0000250"}]} |
