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6QRF

Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with inhibitor

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0006400biological_processtRNA modification
A0008033biological_processtRNA processing
A0008168molecular_functionmethyltransferase activity
A0032259biological_processmethylation
A0052906molecular_functiontRNA (guanine(37)-N1)-methyltransferase activity
B0005737cellular_componentcytoplasm
B0006400biological_processtRNA modification
B0008033biological_processtRNA processing
B0008168molecular_functionmethyltransferase activity
B0032259biological_processmethylation
B0052906molecular_functiontRNA (guanine(37)-N1)-methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues11
Detailsbinding site for residue JF5 A 301
ChainResidue
APRO83
AGLY140
AGLY141
ATHR84
APRO85
AGLU112
ASER132
AILE133
AGLY134
ATYR136
ALEU138

site_idAC2
Number of Residues6
Detailsbinding site for residue JF5 A 302
ChainResidue
APRO85
AALA86
AASP135
BALA176
BGLU180
BHOH427

site_idAC3
Number of Residues5
Detailsbinding site for residue JF5 A 303
ChainResidue
ALEU179
AGLU180
BPRO85
BALA86
BASP135

site_idAC4
Number of Residues11
Detailsbinding site for residue JF5 B 301
ChainResidue
BPRO83
BTHR84
BPRO85
BGLU112
BSER132
BILE133
BGLY134
BTYR136
BLEU138
BGLY140
BGLY141

site_idAC5
Number of Residues3
Detailsbinding site for residue SO4 B 302
ChainResidue
BARG127
BARG129
BHOH416

Functional Information from PROSITE/UniProt
site_idPS00430
Number of Residues86
DetailsTONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. gsmkidvvtifpeylqpvrqslpgkaidaglvdvavhdlrrwthdvhksvddspygggpgmvmkptvwgdaldeicts.....................................ETLLVVPT
ChainResidueDetails
AGLY-1-THR84

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PDB entries from 2024-07-17

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