6QOZ
CryoEM reconstruction of Cowpea Mosaic Virus (CPMV) bound to an Affimer reagent
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0019028 | cellular_component | viral capsid |
| A | 0044219 | cellular_component | host cell plasmodesma |
| A | 0046740 | biological_process | transport of virus in host, cell to cell |
| B | 0005198 | molecular_function | structural molecule activity |
| B | 0019028 | cellular_component | viral capsid |
| C | 0004869 | molecular_function | cysteine-type endopeptidase inhibitor activity |
| D | 0019028 | cellular_component | viral capsid |
| D | 0044219 | cellular_component | host cell plasmodesma |
| D | 0046740 | biological_process | transport of virus in host, cell to cell |
| E | 0005198 | molecular_function | structural molecule activity |
| E | 0019028 | cellular_component | viral capsid |
| F | 0019028 | cellular_component | viral capsid |
| F | 0044219 | cellular_component | host cell plasmodesma |
| F | 0046740 | biological_process | transport of virus in host, cell to cell |
| G | 0005198 | molecular_function | structural molecule activity |
| G | 0019028 | cellular_component | viral capsid |
| H | 0019028 | cellular_component | viral capsid |
| H | 0044219 | cellular_component | host cell plasmodesma |
| H | 0046740 | biological_process | transport of virus in host, cell to cell |
| I | 0005198 | molecular_function | structural molecule activity |
| I | 0019028 | cellular_component | viral capsid |
Functional Information from PROSITE/UniProt
| site_id | PS00287 |
| Number of Residues | 14 |
| Details | CYSTATIN Cysteine proteases inhibitors signature. EQVVAGTMYyLTLE |
| Chain | Residue | Details |
| C | GLU66-GLU79 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | SITE: Interaction with the viral RNA => ECO:0000269|PubMed:26657148 |
| Chain | Residue | Details |
| B | ARG17 | |
| E | ARG17 | |
| G | ARG17 | |
| I | ARG17 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | SITE: Interaction with the viral RNA; probable role in viral RNA packaging => ECO:0000269|PubMed:28373698 |
| Chain | Residue | Details |
| B | ASN174 | |
| E | ASN174 | |
| G | ASN174 | |
| I | ASN174 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 4 |
| Details | SITE: Interaction with the viral RNA; probable role in viral RNA packaging => ECO:0000269|PubMed:26657148, ECO:0000269|PubMed:28373698 |
| Chain | Residue | Details |
| B | TRP190 | |
| E | TRP190 | |
| G | TRP190 | |
| I | TRP190 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 4 |
| Details | MOD_RES: N-acetylmethionine; by host => ECO:0000269|PubMed:6641721 |
| Chain | Residue | Details |
| B | MET1 | |
| E | MET1 | |
| G | MET1 | |
| I | MET1 |
