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6QOT

Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with Fragment 23 (3-Amino-5-(4-methoxyphenyl)pyrazole)

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0006400biological_processtRNA modification
A0008033biological_processtRNA processing
A0008168molecular_functionmethyltransferase activity
A0032259biological_processmethylation
A0052906molecular_functiontRNA (guanine(37)-N1)-methyltransferase activity
B0005737cellular_componentcytoplasm
B0006400biological_processtRNA modification
B0008033biological_processtRNA processing
B0008168molecular_functionmethyltransferase activity
B0032259biological_processmethylation
B0052906molecular_functiontRNA (guanine(37)-N1)-methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues13
Detailsbinding site for residue 6SD A 301
ChainResidue
APRO83
ATYR136
ALEU138
AGLY140
AGLY141
ATHR84
APRO85
AGLY109
AARG110
ATYR111
ASER132
AILE133
AGLY134

site_idAC2
Number of Residues14
Detailsbinding site for residue 6SD B 301
ChainResidue
BPRO83
BTHR84
BPRO85
BGLY109
BARG110
BTYR111
BSER132
BILE133
BGLY134
BTYR136
BLEU138
BGLY140
BGLY141
BEDO302

site_idAC3
Number of Residues5
Detailsbinding site for residue EDO B 302
ChainResidue
BPRO83
BTHR84
BGLY113
BILE114
B6SD301

Functional Information from PROSITE/UniProt
site_idPS00430
Number of Residues86
DetailsTONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. gsmkidvvtifpeylqpvrqslpgkaidaglvdvavhdlrrwthdvhksvddspygggpgmvmkptvwgdaldeicts.....................................ETLLVVPT
ChainResidueDetails
AGLY-1-THR84

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PDB entries from 2024-07-24

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