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6QOR

Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with Fragment 21 (2-Amino-3-nitrophenol)

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0006400biological_processtRNA modification
A0008033biological_processtRNA processing
A0008168molecular_functionmethyltransferase activity
A0032259biological_processmethylation
A0052906molecular_functiontRNA (guanine(37)-N1)-methyltransferase activity
B0005737cellular_componentcytoplasm
B0006400biological_processtRNA modification
B0008033biological_processtRNA processing
B0008168molecular_functionmethyltransferase activity
B0032259biological_processmethylation
B0052906molecular_functiontRNA (guanine(37)-N1)-methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues11
Detailsbinding site for residue JBK A 301
ChainResidue
ATHR84
AALA144
AHOH416
APRO85
AVAL131
ASER132
AILE133
AGLY134
ATYR136
AVAL137
ALEU138

site_idAC2
Number of Residues11
Detailsbinding site for residue JBK B 301
ChainResidue
BTHR84
BPRO85
BVAL131
BSER132
BILE133
BGLY134
BTYR136
BVAL137
BLEU138
BALA144
BHOH406

site_idAC3
Number of Residues9
Detailsbinding site for residue SO4 B 302
ChainResidue
AALA123
AARG125
AMET126
ATHR185
AARG186
BASP50
BSER51
BTYR53
BHOH418

Functional Information from PROSITE/UniProt
site_idPS00430
Number of Residues86
DetailsTONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. gsmkidvvtifpeylqpvrqslpgkaidaglvdvavhdlrrwthdvhksvddspygggpgmvmkptvwgdaldeicts.....................................ETLLVVPT
ChainResidueDetails
AGLY-1-THR84

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PDB entries from 2024-07-17

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