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6QO6

Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with Fragment 4 (5-Methoxybenzimidazole)

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0006400biological_processtRNA modification
A0008033biological_processtRNA processing
A0008168molecular_functionmethyltransferase activity
A0032259biological_processmethylation
A0052906molecular_functiontRNA (guanine(37)-N1)-methyltransferase activity
B0005737cellular_componentcytoplasm
B0006400biological_processtRNA modification
B0008033biological_processtRNA processing
B0008168molecular_functionmethyltransferase activity
B0032259biological_processmethylation
B0052906molecular_functiontRNA (guanine(37)-N1)-methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues12
Detailsbinding site for residue 5OB A 301
ChainResidue
APRO83
AGLY140
AGLY141
AALA144
ATHR84
APRO85
ATYR111
ASER132
AILE133
AGLY134
ATYR136
ALEU138

site_idAC2
Number of Residues10
Detailsbinding site for residue 5OB B 301
ChainResidue
BPRO83
BTHR84
BPRO85
BSER132
BILE133
BGLY134
BTYR136
BLEU138
BGLY140
BGLY141

Functional Information from PROSITE/UniProt
site_idPS00430
Number of Residues86
DetailsTONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. gsmkidvvtifpeylqpvrqslpgkaidaglvdvavhdlrrwthdvhksvddspygggpgmvmkptvwgdaldeicts.....................................ETLLVVPT
ChainResidueDetails
AGLY-1-THR84

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PDB entries from 2024-07-17

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