6QKV
Structure of YibK from P. aeruginosa
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0001510 | biological_process | RNA methylation |
| A | 0002131 | biological_process | wobble position cytosine ribose methylation |
| A | 0002132 | biological_process | wobble position uridine ribose methylation |
| A | 0003723 | molecular_function | RNA binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0006396 | biological_process | RNA processing |
| A | 0008168 | molecular_function | methyltransferase activity |
| A | 0008173 | molecular_function | RNA methyltransferase activity |
| A | 0008175 | molecular_function | tRNA methyltransferase activity |
| A | 0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity |
| A | 0030488 | biological_process | tRNA methylation |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0141098 | molecular_function | tRNA (cytidine(34)-2'-O)-methyltransferase activity |
| A | 0141102 | molecular_function | tRNA (5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase activity |
| B | 0001510 | biological_process | RNA methylation |
| B | 0002131 | biological_process | wobble position cytosine ribose methylation |
| B | 0002132 | biological_process | wobble position uridine ribose methylation |
| B | 0003723 | molecular_function | RNA binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0006396 | biological_process | RNA processing |
| B | 0008168 | molecular_function | methyltransferase activity |
| B | 0008173 | molecular_function | RNA methyltransferase activity |
| B | 0008175 | molecular_function | tRNA methyltransferase activity |
| B | 0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity |
| B | 0030488 | biological_process | tRNA methylation |
| B | 0042802 | molecular_function | identical protein binding |
| B | 0141098 | molecular_function | tRNA (cytidine(34)-2'-O)-methyltransferase activity |
| B | 0141102 | molecular_function | tRNA (5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 9 |
| Details | binding site for residue SO4 A 201 |
| Chain | Residue |
| A | ASN19 |
| A | PRO66 |
| A | GLU107 |
| A | ASN137 |
| A | LEU138 |
| A | HOH303 |
| A | HOH309 |
| A | HOH311 |
| B | ARG25 |
| site_id | AC2 |
| Number of Residues | 10 |
| Details | binding site for residue SO4 A 202 |
| Chain | Residue |
| A | ARG79 |
| A | ARG89 |
| A | ALA95 |
| A | HOH305 |
| A | HOH316 |
| A | HOH318 |
| A | HOH327 |
| A | HOH329 |
| A | HOH351 |
| A | HOH351 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 A 203 |
| Chain | Residue |
| A | THR84 |
| A | THR85 |
| A | GLY110 |
| A | HOH314 |
| site_id | AC4 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 A 204 |
| Chain | Residue |
| A | TYR67 |
| A | GLN69 |
| site_id | AC5 |
| Number of Residues | 3 |
| Details | binding site for residue GOL A 205 |
| Chain | Residue |
| A | ARG151 |
| A | HOH320 |
| A | HOH326 |
| site_id | AC6 |
| Number of Residues | 6 |
| Details | binding site for residue GOL A 206 |
| Chain | Residue |
| A | SER4 |
| A | HIS5 |
| A | HIS8 |
| A | SER33 |
| A | HOH315 |
| A | HOH359 |
| site_id | AC7 |
| Number of Residues | 3 |
| Details | binding site for residue GOL A 207 |
| Chain | Residue |
| A | VAL115 |
| A | HOH302 |
| A | HOH308 |
| site_id | AC8 |
| Number of Residues | 8 |
| Details | binding site for residue SO4 B 201 |
| Chain | Residue |
| B | ARG79 |
| B | ARG89 |
| B | VAL94 |
| B | ALA95 |
| B | HOH304 |
| B | HOH306 |
| B | HOH307 |
| B | HOH310 |
| site_id | AC9 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 B 202 |
| Chain | Residue |
| B | THR84 |
| B | THR85 |
| B | ARG109 |
| site_id | AD1 |
| Number of Residues | 5 |
| Details | binding site for residue GOL B 203 |
| Chain | Residue |
| B | SER4 |
| B | HIS5 |
| B | HIS8 |
| B | GLY99 |
| B | GOL204 |
| site_id | AD2 |
| Number of Residues | 6 |
| Details | binding site for residue GOL B 204 |
| Chain | Residue |
| B | SER4 |
| B | HIS5 |
| B | HIS8 |
| B | LEU75 |
| B | GOL203 |
| B | HOH301 |
