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6QKV

Structure of YibK from P. aeruginosa

Functional Information from GO Data
ChainGOidnamespacecontents
A0001510biological_processRNA methylation
A0002131biological_processwobble position cytosine ribose methylation
A0002132biological_processwobble position uridine ribose methylation
A0003723molecular_functionRNA binding
A0005737cellular_componentcytoplasm
A0006396biological_processRNA processing
A0008033biological_processtRNA processing
A0008168molecular_functionmethyltransferase activity
A0008173molecular_functionRNA methyltransferase activity
A0008175molecular_functiontRNA methyltransferase activity
A0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
A0016740molecular_functiontransferase activity
A0030488biological_processtRNA methylation
A0032259biological_processmethylation
A0042802molecular_functionidentical protein binding
A0141098molecular_functiontRNA (cytidine(34)-2'-O)-methyltransferase activity
A0141102molecular_functiontRNA (5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase activity
B0001510biological_processRNA methylation
B0002131biological_processwobble position cytosine ribose methylation
B0002132biological_processwobble position uridine ribose methylation
B0003723molecular_functionRNA binding
B0005737cellular_componentcytoplasm
B0006396biological_processRNA processing
B0008033biological_processtRNA processing
B0008168molecular_functionmethyltransferase activity
B0008173molecular_functionRNA methyltransferase activity
B0008175molecular_functiontRNA methyltransferase activity
B0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
B0016740molecular_functiontransferase activity
B0030488biological_processtRNA methylation
B0032259biological_processmethylation
B0042802molecular_functionidentical protein binding
B0141098molecular_functiontRNA (cytidine(34)-2'-O)-methyltransferase activity
B0141102molecular_functiontRNA (5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues9
Detailsbinding site for residue SO4 A 201
ChainResidue
AASN19
APRO66
AGLU107
AASN137
ALEU138
AHOH303
AHOH309
AHOH311
BARG25

site_idAC2
Number of Residues10
Detailsbinding site for residue SO4 A 202
ChainResidue
AARG79
AARG89
AALA95
AHOH305
AHOH316
AHOH318
AHOH327
AHOH329
AHOH351
AHOH351

site_idAC3
Number of Residues4
Detailsbinding site for residue SO4 A 203
ChainResidue
ATHR84
ATHR85
AGLY110
AHOH314

site_idAC4
Number of Residues2
Detailsbinding site for residue SO4 A 204
ChainResidue
ATYR67
AGLN69

site_idAC5
Number of Residues3
Detailsbinding site for residue GOL A 205
ChainResidue
AARG151
AHOH320
AHOH326

site_idAC6
Number of Residues6
Detailsbinding site for residue GOL A 206
ChainResidue
ASER4
AHIS5
AHIS8
ASER33
AHOH315
AHOH359

site_idAC7
Number of Residues3
Detailsbinding site for residue GOL A 207
ChainResidue
AVAL115
AHOH302
AHOH308

site_idAC8
Number of Residues8
Detailsbinding site for residue SO4 B 201
ChainResidue
BARG79
BARG89
BVAL94
BALA95
BHOH304
BHOH306
BHOH307
BHOH310

site_idAC9
Number of Residues3
Detailsbinding site for residue SO4 B 202
ChainResidue
BTHR84
BTHR85
BARG109

site_idAD1
Number of Residues5
Detailsbinding site for residue GOL B 203
ChainResidue
BSER4
BHIS5
BHIS8
BGLY99
BGOL204

site_idAD2
Number of Residues6
Detailsbinding site for residue GOL B 204
ChainResidue
BSER4
BHIS5
BHIS8
BLEU75
BGOL203
BHOH301

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PDB entries from 2026-01-28

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