English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6QGY

Crystal structure of E.coli BamA beta-barrel in complex with nanobody B12

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0019867	cellular_component	outer membrane
A	0071709	biological_process	membrane assembly
C	0019867	cellular_component	outer membrane
C	0071709	biological_process	membrane assembly

Functional Information from PDB Data

site_id	AC1
Number of Residues	2
Details	binding site for residue C8E A 901

Chain	Residue
A	GLU470
A	TYR509

site_id	AC2
Number of Residues	1
Details	binding site for residue C8E A 902

Chain	Residue
A	ILE458

site_id	AC3
Number of Residues	1
Details	binding site for residue C8E A 903

Chain	Residue
A	TYR578

site_id	AC4
Number of Residues	3
Details	binding site for residue C8E A 904

Chain	Residue
A	VAL483
A	LEU515
C	VAL599

site_id	AC5
Number of Residues	6
Details	binding site for residue C8E A 905

Chain	Residue
A	THR588
D	GLN4
D	TRP33
D	TYR113
A	ASP582
A	ARG583

site_id	AC6
Number of Residues	4
Details	binding site for residue C8E C 901

Chain	Residue
C	TRP627
C	PRO721
C	PRO723
C	PHE737

site_id	AC7
Number of Residues	1
Details	binding site for residue C8E C 902

Chain	Residue
C	LEU489

site_id	AC8
Number of Residues	4
Details	binding site for residue C8E C 903

Chain	Residue
A	VAL513
C	PHE570
C	GLY603
C	C8E904

site_id	AC9
Number of Residues	2
Details	binding site for residue C8E C 904

Chain	Residue
C	TYR531
C	C8E903

site_id	AD1
Number of Residues	1
Details	binding site for residue C8E C 905

Chain	Residue
C	SER484

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	16
Details	TRANSMEM: Beta stranded; Name=Strand 1 => ECO:0000269\|PubMed:24914988

Chain	Residue	Details
A	SER425-GLY433
C	SER425-GLY433

site_id	SWS_FT_FI2
Number of Residues	2
Details	TOPO_DOM: Extracellular; loop 1 => ECO:0000305

Chain	Residue	Details
A	THR434-GLU435
C	THR434-GLU435

site_id	SWS_FT_FI3
Number of Residues	20
Details	TRANSMEM: Beta stranded; Name=Strand 2 => ECO:0000269\|PubMed:24914988

Chain	Residue	Details
A	SER436-GLN446
C	SER436-GLN446

site_id	SWS_FT_FI4
Number of Residues	126
Details	TOPO_DOM: Periplasmic => ECO:0000305

Chain	Residue	Details
A	ASP447-TYR454
C	LYS507-TYR522
C	TYR578-GLY590
C	PRO620-VAL628
C	ILE719-SER732
C	SER778
A	PRO476-VAL483
A	LYS507-TYR522
A	TYR578-GLY590
A	PRO620-VAL628
A	ILE719-SER732
A	SER778
C	ASP447-TYR454
C	PRO476-VAL483

site_id	SWS_FT_FI5
Number of Residues	14
Details	TRANSMEM: Beta stranded; Name=Strand 3 => ECO:0000269\|PubMed:24914988

Chain	Residue	Details
A	ALA455-LYS462
C	ALA455-LYS462

site_id	SWS_FT_FI6
Number of Residues	4
Details	TOPO_DOM: Extracellular; loop 2 => ECO:0000305

Chain	Residue	Details
A	ASN463-TYR465
C	ASN463-TYR465

site_id	SWS_FT_FI7
Number of Residues	18
Details	TRANSMEM: Beta stranded; Name=Strand 4 => ECO:0000269\|PubMed:24914988

Chain	Residue	Details
A	GLN466-ASN475
C	GLN466-ASN475

site_id	SWS_FT_FI8
Number of Residues	22
Details	TRANSMEM: Beta stranded; Name=Strand 5 => ECO:0000269\|PubMed:24914988

Chain	Residue	Details
A	SER484-GLN495
C	SER484-GLN495

site_id	SWS_FT_FI9
Number of Residues	16
Details	TOPO_DOM: Extracellular; loop 3 => ECO:0000305

Chain	Residue	Details
A	ALA496-TYR504
C	ALA496-TYR504

site_id	SWS_FT_FI10
Number of Residues	2
Details	TRANSMEM: Beta stranded; Name=Strand 6 => ECO:0000269\|PubMed:24914988

Chain	Residue	Details
A	THR505-ASN506
C	THR505-ASN506

site_id	SWS_FT_FI11
Number of Residues	24
Details	TRANSMEM: Beta stranded; Name=Strand 7 => ECO:0000269\|PubMed:24914988

Chain	Residue	Details
A	ASN523-SER535
C	ASN523-SER535

site_id	SWS_FT_FI12
Number of Residues	54
Details	TOPO_DOM: Extracellular; loop 4 => ECO:0000269\|PubMed:23882017, ECO:0000269\|PubMed:24914988

Chain	Residue	Details
A	LEU536-ASN563
C	LEU536-ASN563

site_id	SWS_FT_FI13
Number of Residues	26
Details	TRANSMEM: Beta stranded; Name=Strand 8 => ECO:0000269\|PubMed:24914988

Chain	Residue	Details
A	SER564-THR577
C	SER564-THR577

site_id	SWS_FT_FI14
Number of Residues	18
Details	TRANSMEM: Beta stranded; Name=Strand 9 => ECO:0000269\|PubMed:24914988

Chain	Residue	Details
A	SER591-THR600
C	SER591-THR600

site_id	SWS_FT_FI15
Number of Residues	14
Details	TOPO_DOM: Extracellular; loop 5 => ECO:0000305

Chain	Residue	Details
A	ILE601-TYR608
C	ILE601-TYR608

site_id	SWS_FT_FI16
Number of Residues	20
Details	TRANSMEM: Beta stranded; Name=Strand 10 => ECO:0000269\|PubMed:24914988

Chain	Residue	Details
A	TYR609-VAL619
C	TYR609-VAL619

site_id	SWS_FT_FI17
Number of Residues	20
Details	TRANSMEM: Beta stranded; Name=Strand 11 => ECO:0000269\|PubMed:24914988

Chain	Residue	Details
A	VAL629-ASP639
C	VAL629-ASP639

site_id	SWS_FT_FI18
Number of Residues	136
Details	TOPO_DOM: Extracellular; loop 6 => ECO:0000269\|PubMed:23882017, ECO:0000269\|PubMed:24914988

Chain	Residue	Details
A	GLY640-GLY708
C	GLY640-GLY708

site_id	SWS_FT_FI19
Number of Residues	18
Details	TRANSMEM: Beta stranded; Name=Strand 12 => ECO:0000269\|PubMed:24914988

Chain	Residue	Details
A	ASN709-PHE718
C	ASN709-PHE718

site_id	SWS_FT_FI20
Number of Residues	24
Details	TRANSMEM: Beta stranded; Name=Strand 13 => ECO:0000269\|PubMed:24914988

Chain	Residue	Details
A	VAL733-TRP745
C	VAL733-TRP745

site_id	SWS_FT_FI21
Number of Residues	42
Details	TOPO_DOM: Extracellular; loop 7 => ECO:0000305

Chain	Residue	Details
A	ASP746-ARG767
C	ASP746-ARG767

site_id	SWS_FT_FI22
Number of Residues	18
Details	TRANSMEM: Beta stranded; Name=Strand 14 => ECO:0000269\|PubMed:24914988

Chain	Residue	Details
A	MET768-MET777
C	MET768-MET777

site_id	SWS_FT_FI23
Number of Residues	20
Details	TRANSMEM: Beta stranded; Name=Strand 15 => ECO:0000269\|PubMed:24914988

Chain	Residue	Details
A	PRO779-GLN789
C	PRO779-GLN789

site_id	SWS_FT_FI24
Number of Residues	26
Details	TOPO_DOM: Extracellular; loop 8 => ECO:0000305

Chain	Residue	Details
A	PRO790-GLN803
C	PRO790-GLN803

site_id	SWS_FT_FI25
Number of Residues	8
Details	TRANSMEM: Beta stranded; Name=Strand 16 => ECO:0000269\|PubMed:24914988

Chain	Residue	Details
A	PHE804-LYS808
C	PHE804-LYS808

226707

PDB entries from 2024-10-30

PDB statistics

PDBj update info

Contact PDBj

numon