6QGB
Crystal structure of Ideonella sakaiensis MHETase bound to benzoic acid
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0009279 | cellular_component | cell outer membrane |
A | 0016020 | cellular_component | membrane |
A | 0016787 | molecular_function | hydrolase activity |
A | 0042178 | biological_process | xenobiotic catabolic process |
A | 0046872 | molecular_function | metal ion binding |
A | 0052689 | molecular_function | carboxylic ester hydrolase activity |
B | 0009279 | cellular_component | cell outer membrane |
B | 0016020 | cellular_component | membrane |
B | 0016787 | molecular_function | hydrolase activity |
B | 0042178 | biological_process | xenobiotic catabolic process |
B | 0046872 | molecular_function | metal ion binding |
B | 0052689 | molecular_function | carboxylic ester hydrolase activity |
C | 0009279 | cellular_component | cell outer membrane |
C | 0016020 | cellular_component | membrane |
C | 0016787 | molecular_function | hydrolase activity |
C | 0042178 | biological_process | xenobiotic catabolic process |
C | 0046872 | molecular_function | metal ion binding |
C | 0052689 | molecular_function | carboxylic ester hydrolase activity |
D | 0009279 | cellular_component | cell outer membrane |
D | 0016020 | cellular_component | membrane |
D | 0016787 | molecular_function | hydrolase activity |
D | 0042178 | biological_process | xenobiotic catabolic process |
D | 0046872 | molecular_function | metal ion binding |
D | 0052689 | molecular_function | carboxylic ester hydrolase activity |
E | 0009279 | cellular_component | cell outer membrane |
E | 0016020 | cellular_component | membrane |
E | 0016787 | molecular_function | hydrolase activity |
E | 0042178 | biological_process | xenobiotic catabolic process |
E | 0046872 | molecular_function | metal ion binding |
E | 0052689 | molecular_function | carboxylic ester hydrolase activity |
F | 0009279 | cellular_component | cell outer membrane |
F | 0016020 | cellular_component | membrane |
F | 0016787 | molecular_function | hydrolase activity |
F | 0042178 | biological_process | xenobiotic catabolic process |
F | 0046872 | molecular_function | metal ion binding |
F | 0052689 | molecular_function | carboxylic ester hydrolase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 11 |
Details | binding site for residue BEZ A 701 |
Chain | Residue |
A | GLY132 |
A | HOH815 |
A | HOH921 |
A | SER225 |
A | LEU254 |
A | ALA257 |
A | TRP397 |
A | ARG411 |
A | PHE415 |
A | SER416 |
A | PHE495 |
site_id | AC2 |
Number of Residues | 6 |
Details | binding site for residue CA A 702 |
Chain | Residue |
A | ASP304 |
A | ASP307 |
A | LEU309 |
A | ASP311 |
A | ILE313 |
A | HOH809 |
site_id | AC3 |
Number of Residues | 1 |
Details | binding site for residue CL A 703 |
Chain | Residue |
A | GLY147 |
site_id | AC4 |
Number of Residues | 1 |
Details | binding site for residue CL A 704 |
Chain | Residue |
A | ASP590 |
site_id | AC5 |
Number of Residues | 3 |
Details | binding site for residue SO4 A 705 |
Chain | Residue |
A | TRP121 |
A | ASN122 |
D | ASN122 |
site_id | AC6 |
Number of Residues | 1 |
Details | binding site for residue SO4 A 706 |
Chain | Residue |
A | ARG519 |
site_id | AC7 |
Number of Residues | 4 |
Details | binding site for residue MPD B 801 |
Chain | Residue |
B | TRP263 |
B | GLN266 |
B | SER267 |
B | ARG359 |
site_id | AC8 |
Number of Residues | 11 |
Details | binding site for residue BEZ B 802 |
Chain | Residue |
B | GLY132 |
B | SER225 |
B | LEU254 |
B | ALA257 |
B | TRP397 |
B | ARG411 |
B | PHE415 |
B | SER416 |
B | PHE495 |
B | HOH1010 |
B | HOH1016 |
site_id | AC9 |
Number of Residues | 6 |
Details | binding site for residue CA B 803 |
Chain | Residue |
B | ASP304 |
B | ASP307 |
B | LEU309 |
B | ASP311 |
B | ILE313 |
B | HOH967 |
site_id | AD1 |
Number of Residues | 2 |
Details | binding site for residue SO4 B 805 |
Chain | Residue |
B | ASN122 |
E | TRP121 |
site_id | AD2 |
Number of Residues | 5 |
Details | binding site for residue SO4 B 806 |
Chain | Residue |
B | ARG480 |
B | HOH902 |
B | HOH907 |
C | ASN65 |
C | GLN199 |
site_id | AD3 |
Number of Residues | 1 |
Details | binding site for residue SO4 B 807 |
Chain | Residue |
B | ARG519 |
site_id | AD4 |
Number of Residues | 9 |
Details | binding site for residue BEZ C 701 |
Chain | Residue |
C | GLY132 |
C | SER225 |
C | LEU254 |
C | TRP397 |
C | PHE415 |
C | SER416 |
C | PHE495 |
C | HOH835 |
C | HOH930 |
site_id | AD5 |
Number of Residues | 6 |
Details | binding site for residue CA C 702 |
Chain | Residue |
C | ASP304 |
C | ASP307 |
C | LEU309 |
C | ASP311 |
C | ILE313 |
C | HOH887 |
site_id | AD6 |
Number of Residues | 1 |
Details | binding site for residue CL C 703 |
Chain | Residue |
C | ASP590 |
site_id | AD7 |
Number of Residues | 2 |
Details | binding site for residue SO4 C 704 |
Chain | Residue |
C | ARG519 |
C | HOH1020 |
site_id | AD8 |
Number of Residues | 11 |
Details | binding site for residue BEZ D 701 |
Chain | Residue |
D | GLY132 |
D | SER225 |
D | LEU254 |
D | ALA257 |
D | TRP397 |
D | ARG411 |
D | PHE415 |
D | SER416 |
D | PHE495 |
D | HOH817 |
D | HOH942 |
site_id | AD9 |
Number of Residues | 6 |
Details | binding site for residue CA D 702 |
Chain | Residue |
D | ASP304 |
D | ASP307 |
D | LEU309 |
D | ASP311 |
D | ILE313 |
D | HOH923 |
site_id | AE1 |
Number of Residues | 11 |
Details | binding site for residue BEZ E 701 |
Chain | Residue |
E | GLY132 |
E | SER225 |
E | LEU254 |
E | ALA257 |
E | TRP397 |
E | ARG411 |
E | PHE415 |
E | SER416 |
E | PHE495 |
E | HOH922 |
E | HOH1007 |
site_id | AE2 |
Number of Residues | 6 |
Details | binding site for residue CA E 702 |
Chain | Residue |
E | ASP307 |
E | LEU309 |
E | ASP311 |
E | ILE313 |
E | HOH837 |
E | ASP304 |
site_id | AE3 |
Number of Residues | 3 |
Details | binding site for residue CL E 703 |
Chain | Residue |
E | ALA515 |
E | GLY516 |
E | ARG519 |
site_id | AE4 |
Number of Residues | 3 |
Details | binding site for residue SO4 E 704 |
Chain | Residue |
A | TYR585 |
A | LYS586 |
E | HOH801 |
site_id | AE5 |
Number of Residues | 12 |
Details | binding site for residue BEZ F 701 |
Chain | Residue |
F | GLY132 |
F | SER225 |
F | LEU254 |
F | ALA257 |
F | TRP397 |
F | ARG411 |
F | PHE415 |
F | SER416 |
F | PHE495 |
F | HIS528 |
F | HOH909 |
F | HOH965 |
site_id | AE6 |
Number of Residues | 6 |
Details | binding site for residue CA F 702 |
Chain | Residue |
F | ASP304 |
F | ASP307 |
F | LEU309 |
F | ASP311 |
F | ILE313 |
F | HOH814 |
site_id | AE7 |
Number of Residues | 1 |
Details | binding site for residue CL F 704 |
Chain | Residue |
F | ASP590 |
site_id | AE8 |
Number of Residues | 1 |
Details | binding site for residue SO4 F 705 |
Chain | Residue |
F | ARG519 |
site_id | AE9 |
Number of Residues | 3 |
Details | binding site for residue SO4 F 706 |
Chain | Residue |
F | ARG124 |
F | HOH827 |
F | HOH942 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 6 |
Details | Active site: {"description":"Acyl-ester intermediate","evidences":[{"source":"PubMed","id":"30979881","evidenceCode":"ECO:0000305"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI2 |
Number of Residues | 12 |
Details | Active site: {"description":"Charge relay system","evidences":[{"source":"PubMed","id":"30979881","evidenceCode":"ECO:0000305"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI3 |
Number of Residues | 30 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"30979881","evidenceCode":"ECO:0000305"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI4 |
Number of Residues | 30 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"30979881","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |