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6Q0Z

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with JS28

Functional Information from GO Data
ChainGOidnamespacecontents
A0000118cellular_componenthistone deacetylase complex
A0004407molecular_functionhistone deacetylase activity
A0006325biological_processchromatin organization
A0016575biological_processhistone deacetylation
B0000118cellular_componenthistone deacetylase complex
B0004407molecular_functionhistone deacetylase activity
B0006325biological_processchromatin organization
B0016575biological_processhistone deacetylation
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 801
ChainResidue
AASP612
AHIS614
AASP705
AP7V804

site_idAC2
Number of Residues5
Detailsbinding site for residue K A 802
ChainResidue
AASP610
AASP612
AHIS614
ASER633
ALEU634

site_idAC3
Number of Residues6
Detailsbinding site for residue K A 803
ChainResidue
APHE623
AASP626
AVAL629
ATYR662
AHOH909
AHOH984

site_idAC4
Number of Residues13
Detailsbinding site for residue P7V A 804
ChainResidue
ASER531
AHIS573
AHIS574
AGLY582
APHE583
AASP612
AHIS614
APHE643
AASP705
ATYR745
AZN801
BTHR780
BHOH1167

site_idAC5
Number of Residues4
Detailsbinding site for residue ZN B 801
ChainResidue
BASP612
BHIS614
BASP705
BP7V804

site_idAC6
Number of Residues5
Detailsbinding site for residue K B 802
ChainResidue
BASP610
BASP612
BHIS614
BSER633
BLEU634

site_idAC7
Number of Residues6
Detailsbinding site for residue K B 803
ChainResidue
BPHE623
BASP626
BVAL629
BTYR662
BHOH998
BHOH1007

site_idAC8
Number of Residues13
Detailsbinding site for residue P7V B 804
ChainResidue
ATHR780
AASN784
BSER531
BHIS573
BHIS574
BGLY582
BPHE583
BASP612
BHIS614
BPHE643
BASP705
BTYR745
BZN801

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PDB entries from 2024-07-17

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