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6PYE

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with NR160

Functional Information from GO Data
ChainGOidnamespacecontents
A0000118cellular_componenthistone deacetylase complex
A0004407molecular_functionhistone deacetylase activity
A0006325biological_processchromatin organization
A0016575biological_processhistone deacetylation
B0000118cellular_componenthistone deacetylase complex
B0004407molecular_functionhistone deacetylase activity
B0006325biological_processchromatin organization
B0016575biological_processhistone deacetylation
Functional Information from PDB Data
site_idAC1
Number of Residues16
Detailsbinding site for residue P5Y A 801
ChainResidue
AHIS463
AASN645
AASP705
ALEU712
ATYR745
AZN804
AHOH963
AHOH1072
ASER531
AHIS573
AHIS574
AGLY582
APHE583
AASP612
AHIS614
APHE643

site_idAC2
Number of Residues8
Detailsbinding site for residue EDO A 802
ChainResidue
AGLN468
ASER471
AARG472
ASER475
AHOH908
AHOH1106
AHOH1131
AHOH1217

site_idAC3
Number of Residues3
Detailsbinding site for residue EDO A 803
ChainResidue
APHE474
AARG488
AHOH1134

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN A 804
ChainResidue
AASP612
AHIS614
AASP705
AP5Y801

site_idAC5
Number of Residues5
Detailsbinding site for residue K A 805
ChainResidue
AASP610
AASP612
AHIS614
ASER633
ALEU634

site_idAC6
Number of Residues6
Detailsbinding site for residue K A 806
ChainResidue
APHE623
AASP626
AVAL629
ATYR662
AHOH1027
AHOH1057

site_idAC7
Number of Residues17
Detailsbinding site for residue P5Y B 801
ChainResidue
BHIS463
BPRO464
BSER531
BHIS573
BHIS574
BGLY582
BPHE583
BASP612
BHIS614
BPHE643
BASN645
BASP705
BLEU712
BTYR745
BZN807
BHOH1018
BHOH1035

site_idAC8
Number of Residues7
Detailsbinding site for residue EDO B 802
ChainResidue
BSER471
BARG472
BSER475
BHOH921
BHOH1014
BHOH1049
BHOH1184

site_idAC9
Number of Residues4
Detailsbinding site for residue EDO B 803
ChainResidue
AARG476
AGLU479
BASN746
BSER749

site_idAD1
Number of Residues4
Detailsbinding site for residue EDO B 804
ChainResidue
BPHE474
BARG488
BHOH931
BHOH1136

site_idAD2
Number of Residues7
Detailsbinding site for residue EDO B 805
ChainResidue
BALA707
BGLY709
BASP710
BGLY714
BPHE715
BHOH901
BHOH987

site_idAD3
Number of Residues4
Detailsbinding site for residue EDO B 806
ChainResidue
BSER475
BGLU478
BGLU479
BHOH1137

site_idAD4
Number of Residues4
Detailsbinding site for residue ZN B 807
ChainResidue
BASP612
BHIS614
BASP705
BP5Y801

site_idAD5
Number of Residues5
Detailsbinding site for residue K B 808
ChainResidue
BASP610
BASP612
BHIS614
BSER633
BLEU634

site_idAD6
Number of Residues6
Detailsbinding site for residue K B 809
ChainResidue
BHOH1012
BPHE623
BASP626
BVAL629
BTYR662
BHOH1009

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PDB entries from 2024-06-12

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