6PTR
Crystal structure of a DnaN sliding clamp (DNA polymerase III subunit beta) from Bartonella birtlesii bound to griselimycin
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003677 | molecular_function | DNA binding |
| A | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0006260 | biological_process | DNA replication |
| A | 0006271 | biological_process | DNA strand elongation involved in DNA replication |
| A | 0008408 | molecular_function | 3'-5' exonuclease activity |
| A | 0009360 | cellular_component | DNA polymerase III complex |
| A | 0016740 | molecular_function | transferase activity |
| A | 0016779 | molecular_function | nucleotidyltransferase activity |
| A | 0071897 | biological_process | DNA biosynthetic process |
| B | 0003677 | molecular_function | DNA binding |
| B | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0006260 | biological_process | DNA replication |
| B | 0006271 | biological_process | DNA strand elongation involved in DNA replication |
| B | 0008408 | molecular_function | 3'-5' exonuclease activity |
| B | 0009360 | cellular_component | DNA polymerase III complex |
| B | 0016740 | molecular_function | transferase activity |
| B | 0016779 | molecular_function | nucleotidyltransferase activity |
| B | 0071897 | biological_process | DNA biosynthetic process |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 3 |
| Details | binding site for residue EDO A 501 |
| Chain | Residue |
| A | GLY65 |
| A | ALA66 |
| A | HOH628 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue EDO A 502 |
| Chain | Residue |
| A | ASP142 |
| A | CYS143 |
| A | GLN337 |
| A | HOH659 |
| A | HOH689 |
| site_id | AC3 |
| Number of Residues | 7 |
| Details | binding site for residue EDO A 503 |
| Chain | Residue |
| A | ASP50 |
| A | GLU52 |
| A | SER121 |
| A | LYS229 |
| A | THR240 |
| A | LYS242 |
| A | LEU49 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | binding site for residue EDO A 504 |
| Chain | Residue |
| A | ALA287 |
| A | VAL300 |
| A | VAL301 |
| A | ASN302 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | binding site for residue EDO A 505 |
| Chain | Residue |
| A | SER135 |
| A | LYS136 |
| A | HIS139 |
| A | HOH657 |
| site_id | AC6 |
| Number of Residues | 1 |
| Details | binding site for residue IOD A 506 |
| Chain | Residue |
| A | ARG286 |
| site_id | AC7 |
| Number of Residues | 1 |
| Details | binding site for residue IOD A 507 |
| Chain | Residue |
| A | ARG372 |
| site_id | AC8 |
| Number of Residues | 1 |
| Details | binding site for residue IOD A 509 |
| Chain | Residue |
| A | ILE29 |
| site_id | AC9 |
| Number of Residues | 1 |
| Details | binding site for residue IOD A 510 |
| Chain | Residue |
| A | SER133 |
| site_id | AD1 |
| Number of Residues | 1 |
| Details | binding site for residue IOD A 511 |
| Chain | Residue |
| A | ASN327 |
| site_id | AD2 |
| Number of Residues | 7 |
| Details | binding site for residue EDO B 501 |
| Chain | Residue |
| B | LEU49 |
| B | ASP50 |
| B | GLU52 |
| B | SER121 |
| B | LYS229 |
| B | LYS242 |
| B | HOH756 |
| site_id | AD3 |
| Number of Residues | 1 |
| Details | binding site for residue IOD B 503 |
| Chain | Residue |
| B | ILE116 |
| site_id | AD4 |
| Number of Residues | 1 |
| Details | binding site for residue IOD B 504 |
| Chain | Residue |
| B | SER133 |
| site_id | AD5 |
| Number of Residues | 1 |
| Details | binding site for residue IOD B 505 |
| Chain | Residue |
| B | ARG286 |
| site_id | AD6 |
| Number of Residues | 21 |
| Details | binding site for ACE-MVA-MP8-NZC-LEU-MP8-LEU-MVA-PRO-MLU-GLY chain X |
| Chain | Residue |
| A | ARG154 |
| A | THR177 |
| A | GLY179 |
| A | HIS180 |
| A | PRO249 |
| A | ASP250 |
| A | VAL254 |
| A | MET369 |
| A | PRO370 |
| A | VAL371 |
| A | ARG372 |
| A | HOH615 |
| A | HOH737 |
| X | HOH101 |
| X | HOH102 |
| X | HOH103 |
| X | HOH104 |
| X | HOH105 |
| X | HOH106 |
| X | HOH107 |
| X | HOH108 |
| site_id | AD7 |
| Number of Residues | 26 |
| Details | binding site for ACE-MVA-MP8-NZC-LEU-MP8-LEU-MVA-PRO-MLU-GLY chain Y |
| Chain | Residue |
| A | VAL27 |
| A | ILE29 |
| A | LEU49 |
| A | ASP50 |
| A | ASP117 |
| A | TYR155 |
| A | LYS242 |
| B | TYR156 |
| B | GLY179 |
| B | HIS180 |
| B | PRO249 |
| B | ASP250 |
| B | VAL254 |
| B | MET369 |
| B | PRO370 |
| B | VAL371 |
| B | ARG372 |
| B | HOH698 |
| Y | HOH101 |
| Y | HOH102 |
| Y | HOH103 |
| Y | HOH104 |
| Y | HOH105 |
| Y | HOH106 |
| Y | HOH107 |
| Y | HOH108 |
