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6PHT

Crystal structure of Marinobacter subterrani acetylpolyamine amidohydrolase (msAPAH) complexed with 5-[(3-aminopropyl)amino]pentylboronic acid

Functional Information from GO Data
ChainGOidnamespacecontents
A0004407molecular_functionhistone deacetylase activity
A0006338biological_processchromatin remodeling
A0046872molecular_functionmetal ion binding
B0004407molecular_functionhistone deacetylase activity
B0006338biological_processchromatin remodeling
B0046872molecular_functionmetal ion binding
C0004407molecular_functionhistone deacetylase activity
C0006338biological_processchromatin remodeling
C0046872molecular_functionmetal ion binding
D0004407molecular_functionhistone deacetylase activity
D0006338biological_processchromatin remodeling
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues15
Detailsbinding site for residue OKP A 401
ChainResidue
AASP117
AGLY321
ATYR323
AZN406
AHOH509
AHOH527
AHOH621
AHIS158
AHIS159
AGLY167
ATYR168
AASP195
AHIS197
APHE225
AASP284

site_idAC2
Number of Residues6
Detailsbinding site for residue K A 402
ChainResidue
APHE206
AARG209
AVAL212
ATYR243
AHOH523
AHOH533

site_idAC3
Number of Residues5
Detailsbinding site for residue K A 403
ChainResidue
AASP193
AASP195
AHIS197
ASER216
ALEU217

site_idAC4
Number of Residues7
Detailsbinding site for residue MG A 404
ChainResidue
ALYS83
AASP104
AASP106
AHOH544
AHOH580
CHOH542
CHOH585

site_idAC5
Number of Residues5
Detailsbinding site for residue MG A 405
ChainResidue
AGLU288
AHOH503
AHOH605
AHOH629
AHOH635

site_idAC6
Number of Residues4
Detailsbinding site for residue ZN A 406
ChainResidue
AASP195
AHIS197
AASP284
AOKP401

site_idAC7
Number of Residues18
Detailsbinding site for residue OKP B 401
ChainResidue
BGLU17
BHIS158
BHIS159
BGLY167
BTYR168
BASP195
BHIS197
BPHE225
BASP284
BGLY321
BTYR323
BZN405
BHOH502
BHOH545
BHOH607
DPHE91
DHOH556
DHOH633

site_idAC8
Number of Residues6
Detailsbinding site for residue K B 402
ChainResidue
BPHE206
BARG209
BVAL212
BTYR243
BHOH528
BHOH557

site_idAC9
Number of Residues5
Detailsbinding site for residue K B 403
ChainResidue
BASP193
BASP195
BHIS197
BSER216
BLEU217

site_idAD1
Number of Residues6
Detailsbinding site for residue MG B 404
ChainResidue
BASP104
BASP106
BHOH542
BHOH553
DHOH541
DHOH566

site_idAD2
Number of Residues4
Detailsbinding site for residue ZN B 405
ChainResidue
BASP195
BHIS197
BASP284
BOKP401

site_idAD3
Number of Residues18
Detailsbinding site for residue OKP C 401
ChainResidue
APHE91
CASP117
CHIS158
CHIS159
CGLY167
CTYR168
CASP195
CHIS197
CPHE225
CASP284
CGLY321
CTYR323
CZN405
CHOH501
CHOH508
CHOH524
CHOH602
CHOH636

site_idAD4
Number of Residues6
Detailsbinding site for residue K C 402
ChainResidue
CPHE206
CARG209
CVAL212
CTYR243
CHOH522
CHOH547

site_idAD5
Number of Residues5
Detailsbinding site for residue K C 403
ChainResidue
CASP193
CASP195
CHIS197
CSER216
CLEU217

site_idAD6
Number of Residues6
Detailsbinding site for residue MG C 404
ChainResidue
AHOH517
AHOH595
CASP104
CASP106
CHOH535
CHOH616

site_idAD7
Number of Residues4
Detailsbinding site for residue ZN C 405
ChainResidue
CASP195
CHIS197
CASP284
COKP401

site_idAD8
Number of Residues19
Detailsbinding site for residue OKP D 401
ChainResidue
BPHE91
DASP117
DHIS158
DHIS159
DGLY167
DTYR168
DASP195
DHIS197
DPHE225
DASP284
DGLY321
DTYR323
DZN405
DHOH501
DHOH502
DHOH515
DHOH544
DHOH607
DHOH627

site_idAD9
Number of Residues6
Detailsbinding site for residue K D 402
ChainResidue
DPHE206
DARG209
DVAL212
DTYR243
DHOH509
DHOH546

site_idAE1
Number of Residues5
Detailsbinding site for residue K D 403
ChainResidue
DASP193
DASP195
DHIS197
DSER216
DLEU217

site_idAE2
Number of Residues7
Detailsbinding site for residue MG D 404
ChainResidue
BHOH522
BHOH567
DLYS83
DASP104
DASP106
DHOH531
DHOH580

site_idAE3
Number of Residues4
Detailsbinding site for residue ZN D 405
ChainResidue
DASP195
DHIS197
DASP284
DOKP401

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PDB entries from 2024-10-09

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