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6P9C

OXA-48 carbapanemase, doripenem complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0008658molecular_functionpenicillin binding
A0008800molecular_functionbeta-lactamase activity
A0017001biological_processantibiotic catabolic process
B0008658molecular_functionpenicillin binding
B0008800molecular_functionbeta-lactamase activity
B0017001biological_processantibiotic catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues11
Detailsbinding site for residue 4J6 A 301
ChainResidue
AALA69
AARG250
AHOH419
ASER70
ASER118
AGLU132
ALEU158
ATHR209
AGLY210
ATYR211
ALEU247

site_idAC2
Number of Residues9
Detailsbinding site for residue O6P A 302
ChainResidue
AASN48
ALYS51
ALEU228
AASP230
AASN231
ATRP233
AGLU261
ALYS262
AILE263

site_idAC3
Number of Residues2
Detailsbinding site for residue CL A 303
ChainResidue
ALYS73
ATRP157

site_idAC4
Number of Residues2
Detailsbinding site for residue CL A 304
ChainResidue
AARG206
BARG206

site_idAC5
Number of Residues4
Detailsbinding site for residue CA A 305
ChainResidue
AHIS34
AGLU37
AGLU256
ACD307

site_idAC6
Number of Residues1
Detailsbinding site for residue CA A 306
ChainResidue
AASP154

site_idAC7
Number of Residues5
Detailsbinding site for residue CD A 307
ChainResidue
AGLU37
AHIS38
AGLU125
AGLU256
ACA305

site_idAC8
Number of Residues12
Detailsbinding site for residue 4J6 B 301
ChainResidue
BALA69
BSER70
BSER118
BLEU158
BLYS208
BTHR209
BGLY210
BTYR211
BSER244
BLEU247
BARG250
BHOH464

site_idAC9
Number of Residues9
Detailsbinding site for residue O6P B 302
ChainResidue
BASN48
BLYS51
BLEU228
BASP230
BASN231
BTRP233
BGLU261
BLYS262
BILE263

site_idAD1
Number of Residues2
Detailsbinding site for residue CL B 303
ChainResidue
BLYS73
BTRP157

site_idAD2
Number of Residues7
Detailsbinding site for residue CA B 305
ChainResidue
AASP143
AGLU147
AHOH413
BASP143
BGLU147
BHOH446
BHOH452

site_idAD3
Number of Residues7
Detailsbinding site for residue CD B 306
ChainResidue
AGLU147
AHOH486
BASP143
BGLU147
BHOH401
BHOH404
BHOH423

Functional Information from PROSITE/UniProt
site_idPS00337
Number of Residues11
DetailsBETA_LACTAMASE_D Beta-lactamase class-D active site. PaSTFKIPnSL
ChainResidueDetails
APRO68-LEU78

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"Acyl-ester intermediate","evidences":[{"source":"PIRSR","id":"PIRSR602137-50","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"25406838","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"26731698","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"31358584","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32150407","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4WMC","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5FAQ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5FAS","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6P97","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6P98","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6P99","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6P9C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6V1O","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"Q8RLA6","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"P13661","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsModified residue: {"description":"N6-carboxylysine","evidences":[{"source":"PIRSR","id":"PIRSR602137-50","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"19477418","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25406838","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3HBR","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4WMC","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

239803

PDB entries from 2025-08-06

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