6P82
Structure of P. aeruginosa ATCC27853 CdnD, Apo form 1
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005524 | molecular_function | ATP binding |
| A | 0009117 | biological_process | nucleotide metabolic process |
| A | 0016779 | molecular_function | nucleotidyltransferase activity |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0051607 | biological_process | defense response to virus |
| A | 0106408 | molecular_function | diadenylate cyclase activity |
| B | 0005524 | molecular_function | ATP binding |
| B | 0009117 | biological_process | nucleotide metabolic process |
| B | 0016779 | molecular_function | nucleotidyltransferase activity |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0051607 | biological_process | defense response to virus |
| B | 0106408 | molecular_function | diadenylate cyclase activity |
| C | 0005524 | molecular_function | ATP binding |
| C | 0009117 | biological_process | nucleotide metabolic process |
| C | 0016779 | molecular_function | nucleotidyltransferase activity |
| C | 0046872 | molecular_function | metal ion binding |
| C | 0051607 | biological_process | defense response to virus |
| C | 0106408 | molecular_function | diadenylate cyclase activity |
| D | 0005524 | molecular_function | ATP binding |
| D | 0009117 | biological_process | nucleotide metabolic process |
| D | 0016779 | molecular_function | nucleotidyltransferase activity |
| D | 0046872 | molecular_function | metal ion binding |
| D | 0051607 | biological_process | defense response to virus |
| D | 0106408 | molecular_function | diadenylate cyclase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 A 401 |
| Chain | Residue |
| A | ASP192 |
| A | LEU193 |
| A | LYS194 |
| A | LYS197 |
| A | ARG255 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 A 402 |
| Chain | Residue |
| A | ASN18 |
| A | GLU19 |
| A | ARG20 |
| A | HOH591 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 A 403 |
| Chain | Residue |
| A | LYS194 |
| A | PRO198 |
| A | SER199 |
| A | HOH574 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 A 404 |
| Chain | Residue |
| A | ARG14 |
| A | ARG290 |
| A | PRO298 |
| A | LEU299 |
| A | SER300 |
| A | HOH513 |
| site_id | AC5 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 A 405 |
| Chain | Residue |
| A | LYS10 |
| A | ARG14 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 A 406 |
| Chain | Residue |
| A | GLN29 |
| A | SER45 |
| A | PHE46 |
| A | LEU47 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 A 407 |
| Chain | Residue |
| A | HIS167 |
| A | ASN172 |
| A | HOH512 |
| A | HOH559 |
| site_id | AC8 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 A 408 |
| Chain | Residue |
| A | ARG20 |
| A | TYR124 |
| B | ALA1 |
| B | LEU2 |
| B | ASN282 |
| site_id | AC9 |
| Number of Residues | 11 |
| Details | binding site for residue SO4 A 409 |
| Chain | Residue |
| A | GLY49 |
| A | SER50 |
| A | ARG53 |
| A | ASP64 |
| A | PHE200 |
| A | SO4410 |
| A | HOH505 |
| A | HOH511 |
| A | HOH517 |
| A | HOH519 |
| A | HOH574 |
| site_id | AD1 |
| Number of Residues | 8 |
| Details | binding site for residue SO4 A 410 |
| Chain | Residue |
| A | LYS56 |
| A | THR57 |
| A | LYS182 |
| A | ASN186 |
| A | SER199 |
| A | SO4409 |
| A | HOH505 |
| A | HOH541 |
| site_id | AD2 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 B 401 |
| Chain | Residue |
| B | ASP192 |
| B | LEU193 |
| B | LYS194 |
| B | ARG255 |
| B | SO4402 |
| B | HOH502 |
| site_id | AD3 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 B 402 |
| Chain | Residue |
| B | LYS194 |
| B | PRO198 |
| B | SER199 |
| B | SO4401 |
| B | HOH520 |
| site_id | AD4 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 B 403 |
| Chain | Residue |
| B | ASN18 |
| B | GLU19 |
| B | ARG20 |
| site_id | AD5 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 B 404 |
| Chain | Residue |
| B | LYS10 |
| B | ARG14 |
| B | HOH507 |
| B | HOH521 |
| B | HOH609 |
| site_id | AD6 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 B 405 |
| Chain | Residue |
| B | GLN29 |
| B | PHE46 |
| B | LEU47 |
| site_id | AD7 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 B 406 |
| Chain | Residue |
| B | HIS167 |
| B | HOH515 |
| B | HOH526 |
| B | HOH538 |
| site_id | AD8 |
| Number of Residues | 10 |
| Details | binding site for residue SO4 B 407 |
| Chain | Residue |
| B | GLY49 |
| B | SER50 |
| B | ARG53 |
| B | ASP64 |
| B | PHE200 |
| B | SO4408 |
| B | HOH505 |
| B | HOH520 |
| B | HOH537 |
| B | HOH563 |
| site_id | AD9 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 B 408 |
| Chain | Residue |
| B | LYS56 |
| B | THR57 |
| B | LYS182 |
| B | ASN186 |
| B | SER199 |
| B | SO4407 |
| B | HOH565 |
| site_id | AE1 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 C 401 |
| Chain | Residue |
| C | ARG255 |
| C | HOH507 |
| C | ASP192 |
| C | LYS194 |
| C | LYS197 |
| site_id | AE2 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 C 402 |
| Chain | Residue |
| C | PRO198 |
| C | SER199 |
| C | HOH515 |
| site_id | AE3 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 C 403 |
| Chain | Residue |
| C | LYS10 |
| C | ARG14 |
| C | HOH511 |
| site_id | AE4 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 C 404 |
| Chain | Residue |
| C | ASN18 |
| C | GLU19 |
| C | ARG20 |
| site_id | AE5 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 C 405 |
| Chain | Residue |
| C | GLN29 |
| C | PHE46 |
| C | LEU47 |
| site_id | AE6 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 C 406 |
| Chain | Residue |
| C | HIS167 |
| C | ASN172 |
| C | HOH534 |
| C | HOH544 |
| site_id | AE7 |
| Number of Residues | 9 |
| Details | binding site for residue SO4 C 407 |
| Chain | Residue |
| C | GLY49 |
| C | SER50 |
| C | ARG53 |
| C | PHE200 |
| C | SO4408 |
| C | HOH505 |
| C | HOH515 |
| C | HOH519 |
| C | HOH525 |
| site_id | AE8 |
| Number of Residues | 8 |
| Details | binding site for residue SO4 C 408 |
| Chain | Residue |
| C | LYS56 |
| C | THR57 |
| C | LYS182 |
| C | ASN186 |
| C | SER199 |
| C | SO4407 |
| C | HOH506 |
| C | HOH552 |
| site_id | AE9 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 D 401 |
| Chain | Residue |
| D | ARG14 |
| D | ARG290 |
| D | PRO298 |
| D | LEU299 |
| D | SER300 |
| D | HOH504 |
| D | HOH512 |
| site_id | AF1 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 D 402 |
| Chain | Residue |
| D | ASP192 |
| D | LEU193 |
| D | LYS194 |
| D | ARG255 |
| D | HOH506 |
| site_id | AF2 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 D 403 |
| Chain | Residue |
| D | ASN18 |
| D | GLU19 |
| D | ARG20 |
| site_id | AF3 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 D 404 |
| Chain | Residue |
| A | HIS115 |
| D | VAL114 |
| D | HIS115 |
| D | ARG125 |
| site_id | AF4 |
| Number of Residues | 10 |
| Details | binding site for residue SO4 D 405 |
| Chain | Residue |
| D | LYS70 |
| D | LYS70 |
| D | ASP71 |
| D | ASP71 |
| D | SER72 |
| D | SER72 |
| D | HOH505 |
| D | HOH505 |
| D | HOH556 |
| D | HOH556 |
| site_id | AF5 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 D 406 |
| Chain | Residue |
| D | HIS167 |
| D | ASN172 |
| D | HOH510 |
| D | HOH515 |
| site_id | AF6 |
| Number of Residues | 10 |
| Details | binding site for residue SO4 D 407 |
| Chain | Residue |
| D | GLY49 |
| D | SER50 |
| D | ARG53 |
| D | PHE200 |
| D | SO4408 |
| D | HOH516 |
| D | HOH539 |
| D | HOH570 |
| D | HOH598 |
| D | HOH609 |
| site_id | AF7 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 D 408 |
| Chain | Residue |
| D | LYS56 |
| D | THR57 |
| D | LYS182 |
| D | ASN186 |
| D | SER199 |
| D | SO4407 |
| D | HOH525 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 40 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:31932165, ECO:0007744|PDB:6P8J |
| Chain | Residue | Details |
| A | SER50 | |
| A | PRO245 | |
| B | SER50 | |
| B | ARG53 | |
| B | LYS56 | |
| B | ASP62 | |
| B | ASP64 | |
| B | ASP130 | |
| B | THR154 | |
| B | LYS182 | |
| B | SER199 | |
| A | ARG53 | |
| B | PRO245 | |
| C | SER50 | |
| C | ARG53 | |
| C | LYS56 | |
| C | ASP62 | |
| C | ASP64 | |
| C | ASP130 | |
| C | THR154 | |
| C | LYS182 | |
| C | SER199 | |
| A | LYS56 | |
| C | PRO245 | |
| D | SER50 | |
| D | ARG53 | |
| D | LYS56 | |
| D | ASP62 | |
| D | ASP64 | |
| D | ASP130 | |
| D | THR154 | |
| D | LYS182 | |
| D | SER199 | |
| A | ASP62 | |
| D | PRO245 | |
| A | ASP64 | |
| A | ASP130 | |
| A | THR154 | |
| A | LYS182 | |
| A | SER199 |
