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6OZR

Crystal structure of Mus musculus (Mm) Endonuclease V in complex with a 23mer RNA oligo containing an inosine after a 15 min soak in 10 mM Mg2+

Functional Information from GO Data
ChainGOidnamespacecontents
A0004519molecular_functionendonuclease activity
A0006281biological_processDNA repair
B0004519molecular_functionendonuclease activity
B0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue MG A 301
ChainResidue
AASP52
AASP126
AASP240
AHOH411
AHOH448
CU12

site_idAC2
Number of Residues6
Detailsbinding site for residue K A 302
ChainResidue
AHOH417
CA11
CU12
AASP52
AVAL53
AASP126

site_idAC3
Number of Residues8
Detailsbinding site for residue TLA A 303
ChainResidue
APHE42
ASER43
AGLY44
ALEU45
AGLN46
ATYR72
AHOH433
BASP117

site_idAC4
Number of Residues6
Detailsbinding site for residue TLA A 304
ChainResidue
AASP32
AARG38
BARG27
BLEU145
BTHR146
BGLU147

site_idAC5
Number of Residues6
Detailsbinding site for residue GOL A 305
ChainResidue
AGLN46
ALYS47
AGLN121
BGLN46
BLYS47
BGLN121

site_idAC6
Number of Residues6
Detailsbinding site for residue GOL A 306
ChainResidue
AGLU20
APRO102
AHIS141
ALEU168
ALEU175
ATHR182

site_idAC7
Number of Residues6
Detailsbinding site for residue PGE A 307
ChainResidue
APRO73
ALEU75
AHIS225
AHIS226
ACYS228
AARG229

site_idAC8
Number of Residues7
Detailsbinding site for residue EDO A 308
ChainResidue
AMET195
AGLU218
AVAL221
AHOH405
AHOH440
AHOH476
AHOH501

site_idAC9
Number of Residues3
Detailsbinding site for residue EDO A 309
ChainResidue
ASER71
ALYS76
AVAL78

site_idAD1
Number of Residues6
Detailsbinding site for residue MG B 301
ChainResidue
BASP52
BASP126
BASP240
BHOH407
DU12
DHOH209

site_idAD2
Number of Residues6
Detailsbinding site for residue K B 302
ChainResidue
BASP52
BVAL53
BASP126
BHOH414
DA11
DU12

site_idAD3
Number of Residues9
Detailsbinding site for residue TLA B 303
ChainResidue
AASP117
BPHE42
BSER43
BGLY44
BLEU45
BGLN46
BTYR72
BPRO73
BHOH479

site_idAD4
Number of Residues5
Detailsbinding site for residue PGE B 304
ChainResidue
BPRO73
BHIS225
BHIS226
BCYS228
BARG229

site_idAD5
Number of Residues4
Detailsbinding site for residue EDO B 305
ChainResidue
BTYR79
BGLU80
BLYS114
BHOH439

site_idAD6
Number of Residues2
Detailsbinding site for residue EDO B 306
ChainResidue
BPHE98
BHOH446

site_idAD7
Number of Residues6
Detailsbinding site for residue MG C 101
ChainResidue
CHOH204
CHOH207
CHOH218
CHOH227
CHOH228
CHOH231

site_idAD8
Number of Residues6
Detailsbinding site for residue MG D 101
ChainResidue
CHOH230
DHOH201
DHOH214
DHOH215
DHOH234
DHOH235

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP52
AASP126
BASP52
BASP126

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Interaction with target DNA => ECO:0000250
ChainResidueDetails
ATYR91
BTYR91

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PDB entries from 2024-10-30

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