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6OZO

Crystal structure of Mus musculus (Mm) Endonuclease V in complex with a 23mer RNA oligo containing an inosine after a 30 min soak in 10 mM Mn2+

Functional Information from GO Data
ChainGOidnamespacecontents
A0004519molecular_functionendonuclease activity
A0006281biological_processDNA repair
B0004519molecular_functionendonuclease activity
B0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue MN A 301
ChainResidue
AASP52
AASP240
AHOH429
CU12
CHOH203
CHOH205

site_idAC2
Number of Residues5
Detailsbinding site for residue MN A 302
ChainResidue
AHOH470
AHOH479
ALEU45
AGLN46
AHOH455

site_idAC3
Number of Residues3
Detailsbinding site for residue GOL A 303
ChainResidue
AHOH416
BARG27
BLEU145

site_idAC4
Number of Residues4
Detailsbinding site for residue GOL A 304
ChainResidue
AGLU106
AGLU113
AGLY162
ASER188

site_idAC5
Number of Residues1
Detailsbinding site for residue EDO A 305
ChainResidue
AHIS202

site_idAC6
Number of Residues4
Detailsbinding site for residue PGE A 306
ChainResidue
APRO73
AHIS225
AHIS226
AARG229

site_idAC7
Number of Residues6
Detailsbinding site for residue MN B 301
ChainResidue
BASP52
BASP240
BHOH422
DU12
DHOH206
DHOH207

site_idAC8
Number of Residues6
Detailsbinding site for residue MN B 302
ChainResidue
BASP52
BASP126
BHOH401
BHOH431
DA11
DU12

site_idAC9
Number of Residues6
Detailsbinding site for residue MN B 303
ChainResidue
BLEU45
BGLN46
BTYR72
BPRO73
BHOH408
BHOH426

site_idAD1
Number of Residues2
Detailsbinding site for residue EDO B 304
ChainResidue
BASP201
BHIS202

site_idAD2
Number of Residues6
Detailsbinding site for residue MN C 101
ChainResidue
AASP52
AASP126
AHOH407
AHOH415
CA11
CU12

site_idAD3
Number of Residues7
Detailsbinding site for residue MN C 102
ChainResidue
AHOH448
CU12
CA13
CHOH203
CHOH210
CHOH215
CHOH216

site_idAD4
Number of Residues2
Detailsbinding site for residue MN C 103
ChainResidue
CU18
CHOH214

site_idAD5
Number of Residues6
Detailsbinding site for residue MN D 101
ChainResidue
DU12
DA13
DHOH201
DHOH205
DHOH206
DHOH211

site_idAD6
Number of Residues3
Detailsbinding site for residue MN D 102
ChainResidue
DU18
DHOH204
DHOH209

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP52
AASP126
BASP52
BASP126

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Interaction with target DNA => ECO:0000250
ChainResidueDetails
ATYR91
BTYR91

227561

PDB entries from 2024-11-20

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