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6OZK

Crystal structure of Mus musculus (Mm) Endonuclease V in complex with a 23mer RNA oligo containing an inosine after 68h soak in Ca2+

Functional Information from GO Data
ChainGOidnamespacecontents
A0004519molecular_functionendonuclease activity
A0006281biological_processDNA repair
B0004519molecular_functionendonuclease activity
B0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue CA A 301
ChainResidue
AASP52
AASP240
AHOH402
AHOH453
CU12
CHOH101

site_idAC2
Number of Residues6
Detailsbinding site for residue CA A 302
ChainResidue
CA11
CU12
CHOH103
AASP52
AASP126
AHOH405

site_idAC3
Number of Residues3
Detailsbinding site for residue GOL A 303
ChainResidue
ATYR79
AGLU80
ALYS114

site_idAC4
Number of Residues2
Detailsbinding site for residue GOL A 304
ChainResidue
AHIS225
AHIS226

site_idAC5
Number of Residues5
Detailsbinding site for residue GOL A 305
ChainResidue
AASP39
ASER41
ASER43
BGLN112
BGLU113

site_idAC6
Number of Residues3
Detailsbinding site for residue GOL A 306
ChainResidue
ALYS25
AALA26
AHOH404

site_idAC7
Number of Residues4
Detailsbinding site for residue GOL A 307
ChainResidue
AGLN46
ASER71
ATYR72
AGLU74

site_idAC8
Number of Residues1
Detailsbinding site for residue EDO A 308
ChainResidue
AGLU80

site_idAC9
Number of Residues7
Detailsbinding site for residue TLA A 309
ChainResidue
ATRP17
AGLU20
APHE98
AASP181
ATHR182
APHE183
AHOH413

site_idAD1
Number of Residues6
Detailsbinding site for residue TLA A 310
ChainResidue
AASP32
AARG38
AHOH429
BLEU145
BTHR146
BGLU147

site_idAD2
Number of Residues6
Detailsbinding site for residue CA B 301
ChainResidue
BASP52
BASP240
BHOH415
BHOH432
DU12
DHOH205

site_idAD3
Number of Residues6
Detailsbinding site for residue CA B 302
ChainResidue
BASP52
BASP126
BHOH404
BHOH435
DA11
DU12

site_idAD4
Number of Residues6
Detailsbinding site for residue PGE B 303
ChainResidue
AARG27
ALEU145
ATHR146
AGLU171
BASP32
BARG38

site_idAD5
Number of Residues3
Detailsbinding site for residue PGE B 304
ChainResidue
BHIS225
BHIS226
BCYS228

site_idAD6
Number of Residues4
Detailsbinding site for residue TLA D 101
ChainResidue
DA17
DU18
DG19
DC20

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP52
AASP126
BASP52
BASP126

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Interaction with target DNA => ECO:0000250
ChainResidueDetails
ATYR91
BTYR91

222036

PDB entries from 2024-07-03

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