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6OVH

Cryo-EM structure of Bimetallic dodecameric cage design 3 (BMC3) from cytochrome cb562

Functional Information from GO Data
ChainGOidnamespacecontents
A0005506molecular_functioniron ion binding
A0009055molecular_functionelectron transfer activity
A0020037molecular_functionheme binding
A0022900biological_processelectron transport chain
A0042597cellular_componentperiplasmic space
A0046872molecular_functionmetal ion binding
B0005506molecular_functioniron ion binding
B0009055molecular_functionelectron transfer activity
B0020037molecular_functionheme binding
B0022900biological_processelectron transport chain
B0042597cellular_componentperiplasmic space
B0046872molecular_functionmetal ion binding
C0005506molecular_functioniron ion binding
C0009055molecular_functionelectron transfer activity
C0020037molecular_functionheme binding
C0022900biological_processelectron transport chain
C0042597cellular_componentperiplasmic space
C0046872molecular_functionmetal ion binding
D0005506molecular_functioniron ion binding
D0009055molecular_functionelectron transfer activity
D0020037molecular_functionheme binding
D0022900biological_processelectron transport chain
D0042597cellular_componentperiplasmic space
D0046872molecular_functionmetal ion binding
E0005506molecular_functioniron ion binding
E0009055molecular_functionelectron transfer activity
E0020037molecular_functionheme binding
E0022900biological_processelectron transport chain
E0042597cellular_componentperiplasmic space
E0046872molecular_functionmetal ion binding
F0005506molecular_functioniron ion binding
F0009055molecular_functionelectron transfer activity
F0020037molecular_functionheme binding
F0022900biological_processelectron transport chain
F0042597cellular_componentperiplasmic space
F0046872molecular_functionmetal ion binding
G0005506molecular_functioniron ion binding
G0009055molecular_functionelectron transfer activity
G0020037molecular_functionheme binding
G0022900biological_processelectron transport chain
G0042597cellular_componentperiplasmic space
G0046872molecular_functionmetal ion binding
H0005506molecular_functioniron ion binding
H0009055molecular_functionelectron transfer activity
H0020037molecular_functionheme binding
H0022900biological_processelectron transport chain
H0042597cellular_componentperiplasmic space
H0046872molecular_functionmetal ion binding
I0005506molecular_functioniron ion binding
I0009055molecular_functionelectron transfer activity
I0020037molecular_functionheme binding
I0022900biological_processelectron transport chain
I0042597cellular_componentperiplasmic space
I0046872molecular_functionmetal ion binding
J0005506molecular_functioniron ion binding
J0009055molecular_functionelectron transfer activity
J0020037molecular_functionheme binding
J0022900biological_processelectron transport chain
J0042597cellular_componentperiplasmic space
J0046872molecular_functionmetal ion binding
K0005506molecular_functioniron ion binding
K0009055molecular_functionelectron transfer activity
K0020037molecular_functionheme binding
K0022900biological_processelectron transport chain
K0042597cellular_componentperiplasmic space
K0046872molecular_functionmetal ion binding
L0005506molecular_functioniron ion binding
L0009055molecular_functionelectron transfer activity
L0020037molecular_functionheme binding
L0022900biological_processelectron transport chain
L0042597cellular_componentperiplasmic space
L0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue HEC A 201
ChainResidue
AGLU4
AMET7
AHIS8
ACYS98
ACYS101
AHIS102
AARG106

site_idAC2
Number of Residues4
Detailsbinding site for residue HAE A 202
ChainResidue
CHAE203
DHAE202
ACYS63
CFE201

site_idAC3
Number of Residues5
Detailsbinding site for residue HAE A 203
ChainResidue
ACYS82
AFE207
FCYS82
FHAE203
GHAE203

site_idAC4
Number of Residues3
Detailsbinding site for residue ZN A 204
ChainResidue
AALA1
AASP39
CHIS77

site_idAC5
Number of Residues4
Detailsbinding site for residue ZN A 205
ChainResidue
AASP12
AHIS16
BHIS5
BHIS8

site_idAC6
Number of Residues4
Detailsbinding site for residue ZN A 206
ChainResidue
AHIS5
AHIS8
BASP12
BHIS16

site_idAC7
Number of Residues3
Detailsbinding site for residue FE A 207
ChainResidue
AHAE203
FHAE203
GHAE203

site_idAC8
Number of Residues4
Detailsbinding site for residue FE B 204
ChainResidue
BHAE202
FHAE202
JHAE203
JHOH310

site_idAC9
Number of Residues3
Detailsbinding site for residue FE B 205
ChainResidue
BHAE203
CHAE204
IHAE203

site_idAD1
Number of Residues3
Detailsbinding site for residue ZN B 206
ChainResidue
BALA1
BASP39
FHIS77

site_idAD2
Number of Residues4
Detailsbinding site for residue FE C 201
ChainResidue
AHAE202
CHAE203
CHOH308
DHAE202

site_idAD3
Number of Residues3
Detailsbinding site for residue ZN C 205
ChainResidue
CALA1
CASP39
DHIS77

site_idAD4
Number of Residues4
Detailsbinding site for residue ZN C 206
ChainResidue
CHIS5
CHIS8
LASP12
LHIS16

site_idAD5
Number of Residues3
Detailsbinding site for residue FE D 204
ChainResidue
DHAE203
HHAE204
LHAE204

site_idAD6
Number of Residues3
Detailsbinding site for residue ZN D 205
ChainResidue
AHIS77
DALA1
DASP39

site_idAD7
Number of Residues4
Detailsbinding site for residue ZN D 206
ChainResidue
DASP12
DHIS16
GHIS5
GHIS8

site_idAD8
Number of Residues4
Detailsbinding site for residue ZN D 207
ChainResidue
DHIS5
DHIS8
GASP12
GHIS16

site_idAD9
Number of Residues3
Detailsbinding site for residue ZN E 204
ChainResidue
EALA1
EASP39
GHIS77

site_idAE1
Number of Residues4
Detailsbinding site for residue ZN E 205
ChainResidue
EASP12
EHIS16
FHIS5
FHIS8

site_idAE2
Number of Residues4
Detailsbinding site for residue ZN E 206
ChainResidue
EHIS5
EHIS8
FASP12
FHIS16

site_idAE3
Number of Residues3
Detailsbinding site for residue FE E 207
ChainResidue
EHAE203
JHAE204
KHAE204

site_idAE4
Number of Residues3
Detailsbinding site for residue ZN F 204
ChainResidue
FALA1
FASP39
JHIS77

site_idAE5
Number of Residues3
Detailsbinding site for residue ZN G 204
ChainResidue
GALA1
GASP39
HHIS77

site_idAE6
Number of Residues4
Detailsbinding site for residue FE H 201
ChainResidue
EHAE202
GHAE202
GHOH309
HHAE203

site_idAE7
Number of Residues3
Detailsbinding site for residue ZN H 205
ChainResidue
EHIS77
HALA1
HASP39

site_idAE8
Number of Residues4
Detailsbinding site for residue ZN H 206
ChainResidue
HHIS5
HHIS8
KASP12
KHIS16

site_idAE9
Number of Residues4
Detailsbinding site for residue FE I 204
ChainResidue
LHOH308
IHAE202
KHAE203
LHAE203

site_idAF1
Number of Residues3
Detailsbinding site for residue ZN I 205
ChainResidue
IALA1
IASP39
KHIS77

site_idAF2
Number of Residues4
Detailsbinding site for residue ZN I 206
ChainResidue
IHIS5
IHIS8
JASP12
JHIS16

site_idAF3
Number of Residues4
Detailsbinding site for residue ZN J 201
ChainResidue
IASP12
IHIS16
JHIS5
JHIS8

site_idAF4
Number of Residues3
Detailsbinding site for residue ZN J 205
ChainResidue
BHIS77
JALA1
JASP39

site_idAF5
Number of Residues4
Detailsbinding site for residue ZN K 201
ChainResidue
HASP12
HHIS16
KHIS5
KHIS8

site_idAF6
Number of Residues3
Detailsbinding site for residue ZN K 205
ChainResidue
KALA1
KASP39
LHIS77

site_idAF7
Number of Residues4
Detailsbinding site for residue ZN L 201
ChainResidue
CASP12
CHIS16
LHIS5
LHIS8

site_idAF8
Number of Residues3
Detailsbinding site for residue ZN L 205
ChainResidue
IHIS77
LALA1
LASP39

site_idAF9
Number of Residues12
Detailsbinding site for Di-peptide HEC B 201 and CYS B 98
ChainResidue
BGLU4
BMET7
BHIS8
BLEU94
BLYS95
BTHR96
BTHR97
BASN99
BALA100
BCYS101
BHIS102
BARG106

site_idAG1
Number of Residues12
Detailsbinding site for Di-peptide HEC B 201 and CYS B 101
ChainResidue
BGLU4
BMET7
BHIS8
BTHR97
BCYS98
BASN99
BALA100
BHIS102
BGLN103
BLYS104
BTYR105
BARG106

site_idAG2
Number of Residues11
Detailsbinding site for Di-peptide HAE B 202 and CYS B 63
ChainResidue
BSER59
BASP60
BPHE61
BARG62
BGLY64
BPHE65
BTRP66
BGLU67
BFE204
FHAE202
JHAE203

site_idAG3
Number of Residues9
Detailsbinding site for Di-peptide HAE B 203 and CYS B 82
ChainResidue
BALA79
BLYS80
BGLN81
BLYS83
BVAL84
BFE205
CCYS82
CHAE204
IHAE203

site_idAG4
Number of Residues12
Detailsbinding site for Di-peptide HEC C 202 and CYS C 98
ChainResidue
CGLU4
CMET7
CHIS8
CLEU94
CLYS95
CTHR96
CTHR97
CASN99
CALA100
CCYS101
CHIS102
CARG106

site_idAG5
Number of Residues12
Detailsbinding site for Di-peptide HEC C 202 and CYS C 101
ChainResidue
CGLU4
CMET7
CHIS8
CTHR97
CCYS98
CASN99
CALA100
CHIS102
CGLN103
CLYS104
CTYR105
CARG106

site_idAG6
Number of Residues11
Detailsbinding site for Di-peptide HAE C 203 and CYS C 63
ChainResidue
AHAE202
CSER59
CASP60
CPHE61
CARG62
CGLY64
CPHE65
CTRP66
CGLU67
CFE201
DHAE202

site_idAG7
Number of Residues9
Detailsbinding site for Di-peptide HAE C 204 and CYS C 82
ChainResidue
BHAE203
BFE205
CALA79
CLYS80
CGLN81
CLYS83
CVAL84
ICYS82
IHAE203

site_idAG8
Number of Residues12
Detailsbinding site for Di-peptide HEC D 201 and CYS D 98
ChainResidue
DGLU4
DMET7
DHIS8
DLEU94
DLYS95
DTHR96
DTHR97
DASN99
DALA100
DCYS101
DHIS102
DARG106

site_idAG9
Number of Residues12
Detailsbinding site for Di-peptide HEC D 201 and CYS D 101
ChainResidue
DGLU4
DMET7
DHIS8
DTHR97
DCYS98
DASN99
DALA100
DHIS102
DGLN103
DLYS104
DTYR105
DARG106

site_idAH1
Number of Residues11
Detailsbinding site for Di-peptide HAE D 202 and CYS D 63
ChainResidue
AHAE202
CFE201
CHAE203
DSER59
DASP60
DPHE61
DARG62
DGLY64
DPHE65
DTRP66
DGLU67

site_idAH2
Number of Residues9
Detailsbinding site for Di-peptide HAE D 203 and CYS D 82
ChainResidue
DALA79
DLYS80
DGLN81
DLYS83
DVAL84
DFE204
HCYS82
HHAE204
LHAE204

site_idAH3
Number of Residues12
Detailsbinding site for Di-peptide HEC E 201 and CYS E 98
ChainResidue
EGLU4
EMET7
EHIS8
ELEU94
ELYS95
ETHR96
ETHR97
EASN99
EALA100
ECYS101
EHIS102
EARG106

site_idAH4
Number of Residues12
Detailsbinding site for Di-peptide HEC E 201 and CYS E 101
ChainResidue
EGLU4
EMET7
EHIS8
ETHR97
ECYS98
EASN99
EALA100
EHIS102
EGLN103
ELYS104
ETYR105
EARG106

site_idAH5
Number of Residues11
Detailsbinding site for Di-peptide HAE E 202 and CYS E 63
ChainResidue
ESER59
EASP60
EPHE61
EARG62
EGLY64
EPHE65
ETRP66
EGLU67
GHAE202
HFE201
HHAE203

site_idAH6
Number of Residues9
Detailsbinding site for Di-peptide HAE E 203 and CYS E 82
ChainResidue
EALA79
ELYS80
EGLN81
ELYS83
EVAL84
EFE207
JCYS82
JHAE204
KHAE204

site_idAH7
Number of Residues12
Detailsbinding site for Di-peptide HEC F 201 and CYS F 98
ChainResidue
FGLU4
FMET7
FHIS8
FLEU94
FLYS95
FTHR96
FTHR97
FASN99
FALA100
FCYS101
FHIS102
FARG106

site_idAH8
Number of Residues12
Detailsbinding site for Di-peptide HEC F 201 and CYS F 101
ChainResidue
FGLU4
FMET7
FHIS8
FTHR97
FCYS98
FASN99
FALA100
FHIS102
FGLN103
FLYS104
FTYR105
FARG106

site_idAH9
Number of Residues11
Detailsbinding site for Di-peptide HAE F 202 and CYS F 63
ChainResidue
BHAE202
BFE204
FSER59
FASP60
FPHE61
FARG62
FGLY64
FPHE65
FTRP66
FGLU67
JHAE203

site_idAI1
Number of Residues9
Detailsbinding site for Di-peptide HAE F 203 and CYS F 82
ChainResidue
AHAE203
AFE207
FALA79
FLYS80
FGLN81
FLYS83
FVAL84
GCYS82
GHAE203

site_idAI2
Number of Residues12
Detailsbinding site for Di-peptide HEC G 201 and CYS G 101
ChainResidue
GGLU4
GMET7
GHIS8
GTHR97
GCYS98
GASN99
GALA100
GHIS102
GGLN103
GLYS104
GTYR105
GARG106

site_idAI3
Number of Residues12
Detailsbinding site for Di-peptide HEC G 201 and CYS G 98
ChainResidue
GGLU4
GMET7
GHIS8
GLEU94
GLYS95
GTHR96
GTHR97
GASN99
GALA100
GCYS101
GHIS102
GARG106

site_idAI4
Number of Residues11
Detailsbinding site for Di-peptide HAE G 202 and CYS G 63
ChainResidue
EHAE202
GSER59
GASP60
GPHE61
GARG62
GGLY64
GPHE65
GTRP66
GGLU67
HFE201
HHAE203

site_idAI5
Number of Residues9
Detailsbinding site for Di-peptide HAE G 203 and CYS G 82
ChainResidue
ACYS82
AHAE203
AFE207
FHAE203
GALA79
GLYS80
GGLN81
GLYS83
GVAL84

site_idAI6
Number of Residues12
Detailsbinding site for Di-peptide HEC H 202 and CYS H 101
ChainResidue
HGLU4
HMET7
HHIS8
HTHR97
HCYS98
HASN99
HALA100
HHIS102
HGLN103
HLYS104
HTYR105
HARG106

site_idAI7
Number of Residues12
Detailsbinding site for Di-peptide HEC H 202 and CYS H 98
ChainResidue
HGLU4
HMET7
HHIS8
HLEU94
HLYS95
HTHR96
HTHR97
HASN99
HALA100
HCYS101
HHIS102
HARG106

site_idAI8
Number of Residues11
Detailsbinding site for Di-peptide HAE H 203 and CYS H 63
ChainResidue
EHAE202
GHAE202
HSER59
HASP60
HPHE61
HARG62
HGLY64
HPHE65
HTRP66
HGLU67
HFE201

site_idAI9
Number of Residues9
Detailsbinding site for Di-peptide HAE H 204 and CYS H 82
ChainResidue
DHAE203
DFE204
HALA79
HLYS80
HGLN81
HLYS83
HVAL84
LCYS82
LHAE204

site_idAJ1
Number of Residues12
Detailsbinding site for Di-peptide HEC I 201 and CYS I 101
ChainResidue
IGLU4
IMET7
IHIS8
ITHR97
ICYS98
IASN99
IALA100
IHIS102
IGLN103
ILYS104
ITYR105
IARG106

site_idAJ2
Number of Residues12
Detailsbinding site for Di-peptide HEC I 201 and CYS I 98
ChainResidue
IGLU4
IMET7
IHIS8
ILEU94
ILYS95
ITHR96
ITHR97
IASN99
IALA100
ICYS101
IHIS102
IARG106

site_idAJ3
Number of Residues11
Detailsbinding site for Di-peptide HAE I 202 and CYS I 63
ChainResidue
ISER59
IASP60
IPHE61
IARG62
IGLY64
IPHE65
ITRP66
IGLU67
IFE204
KHAE203
LHAE203

site_idAJ4
Number of Residues9
Detailsbinding site for Di-peptide HAE I 203 and CYS I 82
ChainResidue
BCYS82
BHAE203
BFE205
CHAE204
IALA79
ILYS80
IGLN81
ILYS83
IVAL84

site_idAJ5
Number of Residues12
Detailsbinding site for Di-peptide HEC J 202 and CYS J 101
ChainResidue
JGLU4
JMET7
JHIS8
JTHR97
JCYS98
JASN99
JALA100
JHIS102
JGLN103
JLYS104
JTYR105
JARG106

site_idAJ6
Number of Residues12
Detailsbinding site for Di-peptide HEC J 202 and CYS J 98
ChainResidue
JGLU4
JMET7
JHIS8
JLEU94
JLYS95
JTHR96
JTHR97
JASN99
JALA100
JCYS101
JHIS102
JARG106

site_idAJ7
Number of Residues11
Detailsbinding site for Di-peptide HAE J 203 and CYS J 63
ChainResidue
BHAE202
BFE204
FHAE202
JSER59
JASP60
JPHE61
JARG62
JGLY64
JPHE65
JTRP66
JGLU67

site_idAJ8
Number of Residues9
Detailsbinding site for Di-peptide HAE J 204 and CYS J 82
ChainResidue
EHAE203
EFE207
JALA79
JLYS80
JGLN81
JLYS83
JVAL84
KCYS82
KHAE204

site_idAJ9
Number of Residues12
Detailsbinding site for Di-peptide HEC K 202 and CYS K 101
ChainResidue
KGLU4
KMET7
KHIS8
KTHR97
KCYS98
KASN99
KALA100
KHIS102
KGLN103
KLYS104
KTYR105
KARG106

site_idAK1
Number of Residues12
Detailsbinding site for Di-peptide HEC K 202 and CYS K 98
ChainResidue
KGLU4
KMET7
KHIS8
KLEU94
KLYS95
KTHR96
KTHR97
KASN99
KALA100
KCYS101
KHIS102
KARG106

site_idAK2
Number of Residues11
Detailsbinding site for Di-peptide HAE K 203 and CYS K 63
ChainResidue
IHAE202
IFE204
KSER59
KASP60
KPHE61
KARG62
KGLY64
KPHE65
KTRP66
KGLU67
LHAE203

site_idAK3
Number of Residues9
Detailsbinding site for Di-peptide HAE K 204 and CYS K 82
ChainResidue
ECYS82
EHAE203
EFE207
JHAE204
KALA79
KLYS80
KGLN81
KLYS83
KVAL84

site_idAK4
Number of Residues12
Detailsbinding site for Di-peptide HEC L 202 and CYS L 101
ChainResidue
LGLU4
LMET7
LHIS8
LTHR97
LCYS98
LASN99
LALA100
LHIS102
LGLN103
LLYS104
LTYR105
LARG106

site_idAK5
Number of Residues12
Detailsbinding site for Di-peptide HEC L 202 and CYS L 98
ChainResidue
LGLU4
LMET7
LHIS8
LLEU94
LLYS95
LTHR96
LTHR97
LASN99
LALA100
LCYS101
LHIS102
LARG106

site_idAK6
Number of Residues11
Detailsbinding site for Di-peptide HAE L 203 and CYS L 63
ChainResidue
IHAE202
IFE204
KHAE203
LSER59
LASP60
LPHE61
LARG62
LGLY64
LPHE65
LTRP66
LGLU67

site_idAK7
Number of Residues9
Detailsbinding site for Di-peptide HAE L 204 and CYS L 82
ChainResidue
DCYS82
DHAE203
DFE204
HHAE204
LALA79
LLYS80
LGLN81
LLYS83
LVAL84

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues264
DetailsRegion: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues156
DetailsCompositional bias: {"description":"Basic and acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues24
DetailsBinding site: {"description":"axial binding residue"}
ChainResidueDetails

239492

PDB entries from 2025-07-30

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