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6OTJ

Crystal Structure of Tyrosyl-tRNA synthetase from Neisseria gonorrhoeae with bound L-Tyr

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003723molecular_functionRNA binding
A0004812molecular_functionaminoacyl-tRNA ligase activity
A0004831molecular_functiontyrosine-tRNA ligase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006412biological_processtranslation
A0006418biological_processtRNA aminoacylation for protein translation
A0006437biological_processtyrosyl-tRNA aminoacylation
A0043039biological_processtRNA aminoacylation
B0000166molecular_functionnucleotide binding
B0003723molecular_functionRNA binding
B0004812molecular_functionaminoacyl-tRNA ligase activity
B0004831molecular_functiontyrosine-tRNA ligase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006412biological_processtranslation
B0006418biological_processtRNA aminoacylation for protein translation
B0006437biological_processtyrosyl-tRNA aminoacylation
B0043039biological_processtRNA aminoacylation
Functional Information from PDB Data
site_idAC1
Number of Residues12
Detailsbinding site for residue TYR A 501
ChainResidue
ATYR34
AGLN197
AHOH601
AHOH602
AGLY36
AASP38
ALEU68
AASP78
ATYR171
AGLN175
AASP178
AGLU191

site_idAC2
Number of Residues4
Detailsbinding site for residue SO4 A 502
ChainResidue
ALYS82
AALA83
AALA84
AEDO517

site_idAC3
Number of Residues2
Detailsbinding site for residue SO4 A 503
ChainResidue
ATHR106
APRO107

site_idAC4
Number of Residues2
Detailsbinding site for residue SO4 A 504
ChainResidue
AARG56
AHOH613

site_idAC5
Number of Residues3
Detailsbinding site for residue EDO A 505
ChainResidue
ASER195
AASP196
AHOH611

site_idAC6
Number of Residues1
Detailsbinding site for residue SO4 A 506
ChainResidue
AASN243

site_idAC7
Number of Residues2
Detailsbinding site for residue SO4 A 507
ChainResidue
AALA260
AASP261

site_idAC8
Number of Residues2
Detailsbinding site for residue SO4 A 508
ChainResidue
ALEU274
AGLU302

site_idAC9
Number of Residues4
Detailsbinding site for residue SO4 A 509
ChainResidue
AARG56
AGLN60
APHE273
ASO4510

site_idAD1
Number of Residues3
Detailsbinding site for residue SO4 A 510
ChainResidue
AARG56
APRO107
ASO4509

site_idAD2
Number of Residues2
Detailsbinding site for residue EDO A 511
ChainResidue
AGLU310
AGLU311

site_idAD3
Number of Residues3
Detailsbinding site for residue SO4 A 512
ChainResidue
AARG318
AARG330
AHOH604

site_idAD4
Number of Residues3
Detailsbinding site for residue SO4 A 513
ChainResidue
ATHR332
AGLU333
ASER334

site_idAD5
Number of Residues5
Detailsbinding site for residue SO4 A 514
ChainResidue
ATHR40
AHIS48
AARG86
AEDO518
AHOH606

site_idAD6
Number of Residues1
Detailsbinding site for residue EDO A 515
ChainResidue
AARG102

site_idAD7
Number of Residues2
Detailsbinding site for residue EDO A 516
ChainResidue
AARG102
AASN121

site_idAD8
Number of Residues2
Detailsbinding site for residue EDO A 517
ChainResidue
AARG86
ASO4502

site_idAD9
Number of Residues4
Detailsbinding site for residue EDO A 518
ChainResidue
AHIS45
AGLY47
ALYS231
ASO4514

site_idAE1
Number of Residues4
Detailsbinding site for residue EDO A 519
ChainResidue
AMET129
AASP133
AASP137
ATYR177

site_idAE2
Number of Residues3
Detailsbinding site for residue SO4 A 520
ChainResidue
ATHR235
AGLU236
ALYS258

site_idAE3
Number of Residues2
Detailsbinding site for residue SO4 A 521
ChainResidue
AALA239
ATRP241

site_idAE4
Number of Residues2
Detailsbinding site for residue EDO A 522
ChainResidue
AGLU294
AARG297

site_idAE5
Number of Residues4
Detailsbinding site for residue SO4 A 523
ChainResidue
AASN383
AGLU408
ATYR409
AHOH603

site_idAE6
Number of Residues2
Detailsbinding site for residue SO4 A 524
ChainResidue
ATHR230
ALYS231

site_idAE7
Number of Residues4
Detailsbinding site for residue EDO A 525
ChainResidue
AHIS45
AGLY233
AALA239
AVAL240

site_idAE8
Number of Residues4
Detailsbinding site for residue SO4 A 526
ChainResidue
AGLN15
ATRP198
ALYS287
AALA288

site_idAE9
Number of Residues4
Detailsbinding site for residue SO4 A 527
ChainResidue
ALEU274
AGLU278
AVAL282
AILE298

site_idAF1
Number of Residues11
Detailsbinding site for residue TYR B 501
ChainResidue
BTYR34
BGLY36
BASP38
BLEU68
BTHR73
BASP78
BTYR171
BGLN175
BASP178
BGLN197
BHOH605

site_idAF2
Number of Residues3
Detailsbinding site for residue SO4 B 502
ChainResidue
BALA84
BLYS82
BALA83

site_idAF3
Number of Residues2
Detailsbinding site for residue EDO B 503
ChainResidue
BLYS82
BARG86

site_idAF4
Number of Residues2
Detailsbinding site for residue EDO B 504
ChainResidue
BSER195
BASP196

site_idAF5
Number of Residues4
Detailsbinding site for residue SO4 B 505
ChainResidue
BGLY237
BGLY238
BALA239
BTRP241

site_idAF6
Number of Residues2
Detailsbinding site for residue SO4 B 506
ChainResidue
BALA260
BASP261

site_idAF7
Number of Residues3
Detailsbinding site for residue EDO B 507
ChainResidue
BGLY309
BGLU310
BGLU311

site_idAF8
Number of Residues2
Detailsbinding site for residue SO4 B 508
ChainResidue
BARG318
BARG330

site_idAF9
Number of Residues3
Detailsbinding site for residue EDO B 509
ChainResidue
BALA314
BGLN317
BGLU321

site_idAG1
Number of Residues3
Detailsbinding site for residue SO4 B 510
ChainResidue
BTHR332
BGLU333
BSER334

site_idAG2
Number of Residues3
Detailsbinding site for residue EDO B 511
ChainResidue
BLEU344
BPRO345
BALA346

site_idAG3
Number of Residues5
Detailsbinding site for residue SO4 B 512
ChainResidue
BTHR40
BHIS48
BARG86
BEDO513
BHOH601

site_idAG4
Number of Residues4
Detailsbinding site for residue EDO B 513
ChainResidue
BHIS45
BLYS231
BSO4512
BHOH601

site_idAG5
Number of Residues2
Detailsbinding site for residue SO4 B 514
ChainResidue
BTHR235
BGLU236

site_idAG6
Number of Residues2
Detailsbinding site for residue EDO B 515
ChainResidue
BARG56
BASN115

site_idAG7
Number of Residues2
Detailsbinding site for residue SO4 B 516
ChainResidue
BTHR106
BPRO107

site_idAG8
Number of Residues2
Detailsbinding site for residue SO4 B 517
ChainResidue
BGLY113
BGLY114

site_idAG9
Number of Residues4
Detailsbinding site for residue EDO B 518
ChainResidue
ASER128
AASN130
BSER128
BASN130

site_idAH1
Number of Residues3
Detailsbinding site for residue EDO B 519
ChainResidue
BMET129
BASP137
BTYR177

site_idAH2
Number of Residues2
Detailsbinding site for residue EDO B 520
ChainResidue
BGLU151
BTRP198

site_idAH3
Number of Residues5
Detailsbinding site for residue EDO B 521
ChainResidue
BHIS45
BGLY233
BLYS234
BALA239
BVAL240

site_idAH4
Number of Residues2
Detailsbinding site for residue SO4 B 522
ChainResidue
BARG56
BLEU109

site_idAH5
Number of Residues1
Detailsbinding site for residue EDO B 523
ChainResidue
BARG209

Functional Information from PROSITE/UniProt
site_idPS00178
Number of Residues11
DetailsAA_TRNA_LIGASE_I Aminoacyl-transfer RNA synthetases class-I signature. Pt.ADsLHIGHL
ChainResidueDetails
APRO39-LEU49

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_02006
ChainResidueDetails
ATYR34
ATYR171
AGLN175
ALYS234
BTYR34
BTYR171
BGLN175
BLYS234

226707

PDB entries from 2024-10-30

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