6OND
Crystal structure of Desulfovibrio vulgaris carbon monoxide dehydrogenase produced without CooC, reduced
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003824 | molecular_function | catalytic activity |
A | 0004601 | molecular_function | peroxidase activity |
A | 0006091 | biological_process | generation of precursor metabolites and energy |
A | 0016151 | molecular_function | nickel cation binding |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0018492 | molecular_function | obsolete carbon-monoxide dehydrogenase (acceptor) activity |
A | 0042542 | biological_process | response to hydrogen peroxide |
A | 0043885 | molecular_function | anaerobic carbon-monoxide dehydrogenase activity |
A | 0046872 | molecular_function | metal ion binding |
A | 0050418 | molecular_function | hydroxylamine reductase activity |
A | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
A | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
A | 0098869 | biological_process | cellular oxidant detoxification |
B | 0003824 | molecular_function | catalytic activity |
B | 0004601 | molecular_function | peroxidase activity |
B | 0006091 | biological_process | generation of precursor metabolites and energy |
B | 0016151 | molecular_function | nickel cation binding |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0018492 | molecular_function | obsolete carbon-monoxide dehydrogenase (acceptor) activity |
B | 0042542 | biological_process | response to hydrogen peroxide |
B | 0043885 | molecular_function | anaerobic carbon-monoxide dehydrogenase activity |
B | 0046872 | molecular_function | metal ion binding |
B | 0050418 | molecular_function | hydroxylamine reductase activity |
B | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
B | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
B | 0098869 | biological_process | cellular oxidant detoxification |
C | 0003824 | molecular_function | catalytic activity |
C | 0004601 | molecular_function | peroxidase activity |
C | 0006091 | biological_process | generation of precursor metabolites and energy |
C | 0016151 | molecular_function | nickel cation binding |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0018492 | molecular_function | obsolete carbon-monoxide dehydrogenase (acceptor) activity |
C | 0042542 | biological_process | response to hydrogen peroxide |
C | 0043885 | molecular_function | anaerobic carbon-monoxide dehydrogenase activity |
C | 0046872 | molecular_function | metal ion binding |
C | 0050418 | molecular_function | hydroxylamine reductase activity |
C | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
C | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
C | 0098869 | biological_process | cellular oxidant detoxification |
D | 0003824 | molecular_function | catalytic activity |
D | 0004601 | molecular_function | peroxidase activity |
D | 0006091 | biological_process | generation of precursor metabolites and energy |
D | 0016151 | molecular_function | nickel cation binding |
D | 0016491 | molecular_function | oxidoreductase activity |
D | 0018492 | molecular_function | obsolete carbon-monoxide dehydrogenase (acceptor) activity |
D | 0042542 | biological_process | response to hydrogen peroxide |
D | 0043885 | molecular_function | anaerobic carbon-monoxide dehydrogenase activity |
D | 0046872 | molecular_function | metal ion binding |
D | 0050418 | molecular_function | hydroxylamine reductase activity |
D | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
D | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
D | 0098869 | biological_process | cellular oxidant detoxification |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 7 |
Details | binding site for residue SF4 A 701 |
Chain | Residue |
A | CYS51 |
A | ASN53 |
A | CYS54 |
A | CYS59 |
A | CYS74 |
A | ARG84 |
A | MET203 |
site_id | AC2 |
Number of Residues | 12 |
Details | binding site for residue XCC A 702 |
Chain | Residue |
A | HIS319 |
A | CYS340 |
A | GLY447 |
A | CYS448 |
A | CYS478 |
A | CYS519 |
A | TYR553 |
A | SER554 |
A | LYS556 |
A | FE703 |
A | HIS266 |
A | CYS302 |
site_id | AC3 |
Number of Residues | 3 |
Details | binding site for residue FE A 703 |
Chain | Residue |
A | CYS302 |
A | CYS519 |
A | XCC702 |
site_id | AC4 |
Number of Residues | 6 |
Details | binding site for residue MG A 704 |
Chain | Residue |
A | HOH952 |
A | HOH1158 |
A | HOH1176 |
A | HOH1183 |
B | HOH1057 |
B | HOH1161 |
site_id | AC5 |
Number of Residues | 6 |
Details | binding site for residue MG A 705 |
Chain | Residue |
A | HOH884 |
A | HOH1016 |
B | HOH886 |
B | HOH988 |
B | HOH1003 |
B | HOH1284 |
site_id | AC6 |
Number of Residues | 5 |
Details | binding site for residue CL A 706 |
Chain | Residue |
A | ARG176 |
A | SER541 |
A | GLY598 |
A | HOH825 |
B | ARG624 |
site_id | AC7 |
Number of Residues | 5 |
Details | binding site for residue CL A 707 |
Chain | Residue |
A | GLN594 |
A | HIS617 |
A | ARG621 |
A | HOH1076 |
B | HOH1057 |
site_id | AC8 |
Number of Residues | 6 |
Details | binding site for residue FES B 701 |
Chain | Residue |
A | CYS42 |
A | CYS45 |
A | THR50 |
B | CYS42 |
B | CYS45 |
B | THR50 |
site_id | AC9 |
Number of Residues | 6 |
Details | binding site for residue SF4 B 702 |
Chain | Residue |
B | CYS51 |
B | CYS54 |
B | CYS59 |
B | CYS74 |
B | ARG84 |
B | MET203 |
site_id | AD1 |
Number of Residues | 13 |
Details | binding site for residue XCC B 703 |
Chain | Residue |
B | HIS266 |
B | CYS301 |
B | CYS302 |
B | HIS319 |
B | CYS340 |
B | GLY447 |
B | CYS448 |
B | CYS478 |
B | CYS519 |
B | TYR553 |
B | SER554 |
B | LYS556 |
B | FE704 |
site_id | AD2 |
Number of Residues | 3 |
Details | binding site for residue FE B 704 |
Chain | Residue |
B | CYS302 |
B | CYS519 |
B | XCC703 |
site_id | AD3 |
Number of Residues | 6 |
Details | binding site for residue MG B 705 |
Chain | Residue |
A | HOH1234 |
A | HOH1250 |
A | HOH1273 |
B | HOH841 |
B | HOH964 |
B | HOH1265 |
site_id | AD4 |
Number of Residues | 2 |
Details | binding site for residue CL B 706 |
Chain | Residue |
B | SER409 |
B | HOH1249 |
site_id | AD5 |
Number of Residues | 4 |
Details | binding site for residue CL B 707 |
Chain | Residue |
A | ARG624 |
B | ARG176 |
B | SER541 |
B | HOH817 |
site_id | AD6 |
Number of Residues | 6 |
Details | binding site for residue SF4 C 701 |
Chain | Residue |
C | CYS51 |
C | ASN53 |
C | CYS54 |
C | CYS59 |
C | CYS74 |
C | ARG84 |
site_id | AD7 |
Number of Residues | 6 |
Details | binding site for residue FES C 702 |
Chain | Residue |
C | CYS42 |
C | CYS45 |
C | THR50 |
D | CYS42 |
D | CYS45 |
D | THR50 |
site_id | AD8 |
Number of Residues | 12 |
Details | binding site for residue XCC C 703 |
Chain | Residue |
C | CYS340 |
C | GLY447 |
C | CYS448 |
C | CYS478 |
C | CYS519 |
C | TYR553 |
C | SER554 |
C | LYS556 |
C | FE704 |
C | HIS266 |
C | CYS302 |
C | HIS319 |
site_id | AD9 |
Number of Residues | 3 |
Details | binding site for residue FE C 704 |
Chain | Residue |
C | CYS302 |
C | CYS519 |
C | XCC703 |
site_id | AE1 |
Number of Residues | 6 |
Details | binding site for residue MG C 705 |
Chain | Residue |
C | HOH864 |
C | HOH890 |
C | HOH990 |
C | HOH1163 |
C | HOH1220 |
D | HOH1039 |
site_id | AE2 |
Number of Residues | 5 |
Details | binding site for residue MG C 706 |
Chain | Residue |
C | HOH918 |
C | HOH920 |
C | HOH1107 |
C | HOH1162 |
C | HOH1255 |
site_id | AE3 |
Number of Residues | 4 |
Details | binding site for residue MG C 707 |
Chain | Residue |
C | HOH872 |
C | HOH891 |
C | HOH1229 |
D | HOH1182 |
site_id | AE4 |
Number of Residues | 7 |
Details | binding site for residue SF4 D 701 |
Chain | Residue |
D | CYS51 |
D | ASN53 |
D | CYS54 |
D | CYS59 |
D | CYS74 |
D | ARG84 |
D | MET203 |
site_id | AE5 |
Number of Residues | 13 |
Details | binding site for residue XCC D 702 |
Chain | Residue |
D | HIS266 |
D | CYS301 |
D | CYS302 |
D | HIS319 |
D | CYS340 |
D | GLY447 |
D | CYS448 |
D | CYS478 |
D | CYS519 |
D | TYR553 |
D | SER554 |
D | LYS556 |
D | FE703 |
site_id | AE6 |
Number of Residues | 2 |
Details | binding site for residue FE D 703 |
Chain | Residue |
D | CYS519 |
D | XCC702 |
site_id | AE7 |
Number of Residues | 7 |
Details | binding site for residue GOL D 704 |
Chain | Residue |
D | ASP79 |
D | GLY581 |
D | SER582 |
D | GLU583 |
D | ASN584 |
D | HOH827 |
D | HOH872 |
site_id | AE8 |
Number of Residues | 3 |
Details | binding site for residue MG D 705 |
Chain | Residue |
D | HOH885 |
D | HOH1113 |
D | HOH1158 |
site_id | AE9 |
Number of Residues | 3 |
Details | binding site for residue CL D 706 |
Chain | Residue |
C | ARG624 |
D | ARG176 |
D | SER541 |