6ONC
Crystal structure of Desulfovibrio vulgaris carbon monoxide dehydrogenase produced without CooC, as-isolated
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0004601 | molecular_function | peroxidase activity |
| A | 0006091 | biological_process | generation of precursor metabolites and energy |
| A | 0016151 | molecular_function | nickel cation binding |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0018492 | molecular_function | obsolete carbon-monoxide dehydrogenase (acceptor) activity |
| A | 0042542 | biological_process | response to hydrogen peroxide |
| A | 0043885 | molecular_function | anaerobic carbon-monoxide dehydrogenase activity |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0050418 | molecular_function | hydroxylamine reductase activity |
| A | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
| A | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
| A | 0098869 | biological_process | cellular oxidant detoxification |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0004601 | molecular_function | peroxidase activity |
| B | 0006091 | biological_process | generation of precursor metabolites and energy |
| B | 0016151 | molecular_function | nickel cation binding |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0018492 | molecular_function | obsolete carbon-monoxide dehydrogenase (acceptor) activity |
| B | 0042542 | biological_process | response to hydrogen peroxide |
| B | 0043885 | molecular_function | anaerobic carbon-monoxide dehydrogenase activity |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0050418 | molecular_function | hydroxylamine reductase activity |
| B | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
| B | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
| B | 0098869 | biological_process | cellular oxidant detoxification |
| C | 0003824 | molecular_function | catalytic activity |
| C | 0004601 | molecular_function | peroxidase activity |
| C | 0006091 | biological_process | generation of precursor metabolites and energy |
| C | 0016151 | molecular_function | nickel cation binding |
| C | 0016491 | molecular_function | oxidoreductase activity |
| C | 0018492 | molecular_function | obsolete carbon-monoxide dehydrogenase (acceptor) activity |
| C | 0042542 | biological_process | response to hydrogen peroxide |
| C | 0043885 | molecular_function | anaerobic carbon-monoxide dehydrogenase activity |
| C | 0046872 | molecular_function | metal ion binding |
| C | 0050418 | molecular_function | hydroxylamine reductase activity |
| C | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
| C | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
| C | 0098869 | biological_process | cellular oxidant detoxification |
| D | 0003824 | molecular_function | catalytic activity |
| D | 0004601 | molecular_function | peroxidase activity |
| D | 0006091 | biological_process | generation of precursor metabolites and energy |
| D | 0016151 | molecular_function | nickel cation binding |
| D | 0016491 | molecular_function | oxidoreductase activity |
| D | 0018492 | molecular_function | obsolete carbon-monoxide dehydrogenase (acceptor) activity |
| D | 0042542 | biological_process | response to hydrogen peroxide |
| D | 0043885 | molecular_function | anaerobic carbon-monoxide dehydrogenase activity |
| D | 0046872 | molecular_function | metal ion binding |
| D | 0050418 | molecular_function | hydroxylamine reductase activity |
| D | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
| D | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
| D | 0098869 | biological_process | cellular oxidant detoxification |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | binding site for residue SF4 A 701 |
| Chain | Residue |
| A | CYS51 |
| A | CYS54 |
| A | CYS59 |
| A | CYS74 |
| A | ARG84 |
| A | MET203 |
| site_id | AC2 |
| Number of Residues | 12 |
| Details | binding site for residue XCC A 702 |
| Chain | Residue |
| A | GLY447 |
| A | CYS448 |
| A | CYS478 |
| A | CYS519 |
| A | TYR553 |
| A | SER554 |
| A | LYS556 |
| A | FE703 |
| A | HOH948 |
| A | HIS266 |
| A | CYS302 |
| A | CYS340 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | binding site for residue FE A 703 |
| Chain | Residue |
| A | CYS302 |
| A | CYS519 |
| A | XCC702 |
| A | HOH948 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | binding site for residue GOL A 704 |
| Chain | Residue |
| A | PHE44 |
| A | ARG60 |
| A | HOH925 |
| B | ARG60 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | binding site for residue MG A 705 |
| Chain | Residue |
| A | HOH827 |
| A | HOH865 |
| A | HOH969 |
| A | HOH1074 |
| A | HOH1292 |
| A | HOH1415 |
| site_id | AC6 |
| Number of Residues | 6 |
| Details | binding site for residue FES B 701 |
| Chain | Residue |
| A | CYS42 |
| A | CYS45 |
| A | THR50 |
| B | CYS42 |
| B | CYS45 |
| B | THR50 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | binding site for residue SF4 B 702 |
| Chain | Residue |
| B | CYS51 |
| B | CYS54 |
| B | CYS59 |
| B | CYS74 |
| B | ARG84 |
| B | MET203 |
| site_id | AC8 |
| Number of Residues | 12 |
| Details | binding site for residue XCC B 703 |
| Chain | Residue |
| B | HIS266 |
| B | CYS302 |
| B | HIS319 |
| B | CYS340 |
| B | GLY447 |
| B | CYS448 |
| B | CYS478 |
| B | CYS519 |
| B | TYR553 |
| B | SER554 |
| B | FE704 |
| B | HOH913 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | binding site for residue FE B 704 |
| Chain | Residue |
| B | CYS302 |
| B | CYS519 |
| B | XCC703 |
| B | HOH913 |
| site_id | AD1 |
| Number of Residues | 6 |
| Details | binding site for residue MG B 705 |
| Chain | Residue |
| B | HOH994 |
| B | HOH1022 |
| B | HOH1028 |
| B | HOH1205 |
| B | HOH1309 |
| B | HOH1483 |
| site_id | AD2 |
| Number of Residues | 3 |
| Details | binding site for residue MG B 706 |
| Chain | Residue |
| A | HOH1309 |
| B | HOH822 |
| B | HOH968 |
| site_id | AD3 |
| Number of Residues | 3 |
| Details | binding site for residue CL B 707 |
| Chain | Residue |
| B | ASN164 |
| B | ALA165 |
| B | HOH1291 |
| site_id | AD4 |
| Number of Residues | 7 |
| Details | binding site for residue SF4 C 701 |
| Chain | Residue |
| C | CYS51 |
| C | ASN53 |
| C | CYS54 |
| C | CYS59 |
| C | CYS74 |
| C | ARG84 |
| C | MET203 |
| site_id | AD5 |
| Number of Residues | 11 |
| Details | binding site for residue XCC C 702 |
| Chain | Residue |
| C | HIS266 |
| C | CYS302 |
| C | CYS340 |
| C | GLY447 |
| C | CYS448 |
| C | CYS478 |
| C | CYS519 |
| C | TYR553 |
| C | SER554 |
| C | FE703 |
| C | HOH971 |
| site_id | AD6 |
| Number of Residues | 4 |
| Details | binding site for residue FE C 703 |
| Chain | Residue |
| C | CYS302 |
| C | CYS519 |
| C | XCC702 |
| C | HOH971 |
| site_id | AD7 |
| Number of Residues | 6 |
| Details | binding site for residue GOL C 704 |
| Chain | Residue |
| C | HOH1145 |
| C | ASP79 |
| C | SER582 |
| C | GLU583 |
| C | ASN584 |
| C | HOH1010 |
| site_id | AD8 |
| Number of Residues | 6 |
| Details | binding site for residue MG C 705 |
| Chain | Residue |
| C | HOH1023 |
| C | HOH1042 |
| C | HOH1119 |
| C | HOH1126 |
| C | HOH1308 |
| C | HOH1463 |
| site_id | AD9 |
| Number of Residues | 5 |
| Details | binding site for residue MG C 706 |
| Chain | Residue |
| C | HOH877 |
| C | HOH1046 |
| C | HOH1414 |
| D | HOH1313 |
| D | HOH1344 |
| site_id | AE1 |
| Number of Residues | 3 |
| Details | binding site for residue CL C 707 |
| Chain | Residue |
| C | ARG163 |
| C | ASN164 |
| C | ALA165 |
| site_id | AE2 |
| Number of Residues | 6 |
| Details | binding site for residue FES D 701 |
| Chain | Residue |
| C | CYS42 |
| C | CYS45 |
| C | THR50 |
| D | CYS42 |
| D | CYS45 |
| D | THR50 |
| site_id | AE3 |
| Number of Residues | 6 |
| Details | binding site for residue SF4 D 702 |
| Chain | Residue |
| D | CYS51 |
| D | CYS54 |
| D | CYS59 |
| D | CYS74 |
| D | ARG84 |
| D | MET203 |
| site_id | AE4 |
| Number of Residues | 11 |
| Details | binding site for residue XCC D 703 |
| Chain | Residue |
| D | HIS266 |
| D | CYS302 |
| D | CYS340 |
| D | GLY447 |
| D | CYS448 |
| D | CYS478 |
| D | CYS519 |
| D | TYR553 |
| D | SER554 |
| D | FE704 |
| D | HOH868 |
| site_id | AE5 |
| Number of Residues | 4 |
| Details | binding site for residue FE D 704 |
| Chain | Residue |
| D | CYS302 |
| D | CYS519 |
| D | XCC703 |
| D | HOH868 |
| site_id | AE6 |
| Number of Residues | 7 |
| Details | binding site for residue GOL D 705 |
| Chain | Residue |
| D | ASP79 |
| D | GLY581 |
| D | SER582 |
| D | GLU583 |
| D | ASN584 |
| D | HOH839 |
| D | HOH951 |
| site_id | AE7 |
| Number of Residues | 6 |
| Details | binding site for residue MG D 706 |
| Chain | Residue |
| D | HOH856 |
| D | HOH892 |
| D | HOH1012 |
| D | HOH1148 |
| D | HOH1254 |
| D | HOH1416 |
| site_id | AE8 |
| Number of Residues | 5 |
| Details | binding site for residue MG D 707 |
| Chain | Residue |
| D | GLN406 |
| D | HOH838 |
| D | HOH1077 |
| D | HOH1192 |
| D | HOH1385 |
| site_id | AE9 |
| Number of Residues | 5 |
| Details | binding site for residue MG D 708 |
| Chain | Residue |
| C | HOH1272 |
| C | HOH1338 |
| D | HOH816 |
| D | HOH900 |
| D | HOH1402 |
