6OJR
Crystal structure of Sphingomonas paucimobilis TMY1009 apo-LsdA
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005506 | molecular_function | iron ion binding |
| A | 0010436 | molecular_function | carotenoid dioxygenase activity |
| A | 0016121 | biological_process | carotene catabolic process |
| A | 0016702 | molecular_function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
| A | 0046274 | biological_process | lignin catabolic process |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0050054 | molecular_function | lignostilbene alpha beta-dioxygenase activity |
| A | 0051213 | molecular_function | dioxygenase activity |
| B | 0005506 | molecular_function | iron ion binding |
| B | 0010436 | molecular_function | carotenoid dioxygenase activity |
| B | 0016121 | biological_process | carotene catabolic process |
| B | 0016702 | molecular_function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
| B | 0046274 | biological_process | lignin catabolic process |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0050054 | molecular_function | lignostilbene alpha beta-dioxygenase activity |
| B | 0051213 | molecular_function | dioxygenase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | binding site for residue GOL A 501 |
| Chain | Residue |
| A | ALA127 |
| A | LYS129 |
| A | TYR131 |
| A | THR153 |
| A | PHE155 |
| A | THR200 |
| site_id | AC2 |
| Number of Residues | 1 |
| Details | binding site for residue GOL A 502 |
| Chain | Residue |
| A | HOH619 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | binding site for residue GOL A 503 |
| Chain | Residue |
| A | PRO50 |
| A | ALA2 |
| A | HIS3 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | binding site for residue MG A 504 |
| Chain | Residue |
| A | ARG347 |
| A | ASP372 |
| A | LYS375 |
| A | THR390 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | binding site for residue MG A 505 |
| Chain | Residue |
| A | ARG353 |
| A | ILE354 |
| A | GLU356 |
| A | HOH750 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | binding site for residue MG A 506 |
| Chain | Residue |
| A | THR388 |
| A | ALA411 |
| A | ILE412 |
| A | GLN469 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | binding site for residue GOL B 502 |
| Chain | Residue |
| B | TYR101 |
| B | ARG102 |
| B | THR121 |
| B | LYS134 |
| B | GLU135 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 8 |
| Details | BINDING: BINDING => ECO:0000250 |
| Chain | Residue | Details |
| A | HIS167 | |
| A | HIS218 | |
| A | HIS282 | |
| A | HIS472 | |
| B | HIS167 | |
| B | HIS218 | |
| B | HIS282 | |
| B | HIS472 |
