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Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6OGO

Crystal structure of NDM-9 metallo-beta-lactamase

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0016787	molecular_function	hydrolase activity
A	0017001	biological_process	antibiotic catabolic process
A	0046872	molecular_function	metal ion binding
B	0016787	molecular_function	hydrolase activity
B	0017001	biological_process	antibiotic catabolic process
B	0046872	molecular_function	metal ion binding
C	0016787	molecular_function	hydrolase activity
C	0017001	biological_process	antibiotic catabolic process
C	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	binding site for residue ZN A 301

Chain	Residue
A	HIS120
A	HIS122
A	HIS189
A	PO4306

site_id	AC2
Number of Residues	5
Details	binding site for residue ZN A 302

Chain	Residue
A	ASP124
A	CYS208
A	HIS250
A	CL303
A	PO4306

site_id	AC3
Number of Residues	6
Details	binding site for residue CL A 303

Chain	Residue
A	HIS189
A	LYS211
A	ASN220
A	HIS250
A	ZN302
A	PO4306

site_id	AC4
Number of Residues	5
Details	binding site for residue CL A 304

Chain	Residue
A	PHE240
A	PRO241
A	LYS242
A	EDO308
A	HOH649

site_id	AC5
Number of Residues	4
Details	binding site for residue CL A 305

Chain	Residue
A	HIS250
A	SER251
A	HOH487
A	HOH488

site_id	AC6
Number of Residues	14
Details	binding site for residue PO4 A 306

Chain	Residue
A	ARG45
A	HIS120
A	HIS122
A	ASP124
A	HIS189
A	CYS208
A	ASN220
A	HIS250
A	ZN301
A	ZN302
A	CL303
A	HOH423
A	HOH434
A	HOH476

site_id	AC7
Number of Residues	8
Details	binding site for residue EDO A 307

Chain	Residue
A	ARG81
A	GLY83
A	GLY84
A	HOH421
C	ASN166
C	GLY167
C	TYR184
C	PRO185

site_id	AC8
Number of Residues	8
Details	binding site for residue EDO A 308

Chain	Residue
A	ILE198
A	THR201
A	ILE203
A	LYS242
A	ALA243
A	CL304
A	HOH402
A	HOH404

site_id	AC9
Number of Residues	11
Details	binding site for residue PEG A 309

Chain	Residue
A	ARG52
A	GLN60
A	THR62
A	PRO68
A	GLY69
A	PHE70
A	ALA74
A	ASN76
A	HIS250
A	SER251
A	ALA252

site_id	AD1
Number of Residues	6
Details	binding site for residue PEG A 310

Chain	Residue
A	GLN147
A	SER244
A	MET245
A	PRO253
A	ASP254
A	HOH646

site_id	AD2
Number of Residues	5
Details	binding site for residue PGE A 311

Chain	Residue
A	GLY237
A	ARG256
A	ALA257
A	THR260
A	HOH473

site_id	AD3
Number of Residues	4
Details	binding site for residue ZN B 301

Chain	Residue
B	HIS120
B	HIS122
B	HIS189
B	PO4306

site_id	AD4
Number of Residues	5
Details	binding site for residue ZN B 302

Chain	Residue
B	ASP124
B	CYS208
B	HIS250
B	CL303
B	PO4306

site_id	AD5
Number of Residues	6
Details	binding site for residue CL B 303

Chain	Residue
B	HIS189
B	LYS211
B	ASN220
B	HIS250
B	ZN302
B	PO4306

site_id	AD6
Number of Residues	4
Details	binding site for residue CL B 304

Chain	Residue
B	HIS250
B	SER251
B	HOH463
B	HOH557

site_id	AD7
Number of Residues	4
Details	binding site for residue CL B 305

Chain	Residue
B	PHE240
B	PRO241
B	LYS242
B	EDO307

site_id	AD8
Number of Residues	13
Details	binding site for residue PO4 B 306

Chain	Residue
B	ARG45
B	HIS120
B	HIS122
B	ASP124
B	HIS189
B	CYS208
B	ASN220
B	HIS250
B	ZN301
B	ZN302
B	CL303
B	HOH421
B	HOH428

site_id	AD9
Number of Residues	7
Details	binding site for residue EDO B 307

Chain	Residue
B	GLY197
B	ILE198
B	THR201
B	ILE203
B	PHE240
B	CL305
B	HOH412

site_id	AE1
Number of Residues	9
Details	binding site for residue PEG B 308

Chain	Residue
B	ARG52
B	GLN60
B	GLY69
B	PHE70
B	ASN76
B	SER251
B	ALA252
B	PRO253
B	HOH516

site_id	AE2
Number of Residues	8
Details	binding site for residue GOL B 309

Chain	Residue
B	ASN57
B	ARG81
B	ASP82
B	PRO179
B	ASP199
B	THR201
B	HOH405
B	HOH501

site_id	AE3
Number of Residues	4
Details	binding site for residue ZN C 301

Chain	Residue
C	HIS120
C	HIS122
C	HIS189
C	PO4306

site_id	AE4
Number of Residues	5
Details	binding site for residue ZN C 302

Chain	Residue
C	ASP124
C	CYS208
C	HIS250
C	CL303
C	PO4306

site_id	AE5
Number of Residues	6
Details	binding site for residue CL C 303

Chain	Residue
C	HIS189
C	LYS211
C	ASN220
C	HIS250
C	ZN302
C	PO4306

site_id	AE6
Number of Residues	4
Details	binding site for residue CL C 304

Chain	Residue
C	PHE240
C	PRO241
C	LYS242
C	PGE309

site_id	AE7
Number of Residues	5
Details	binding site for residue CL C 305

Chain	Residue
C	ALA55
C	PRO56
C	ASN57
C	HOH542
C	HOH556

site_id	AE8
Number of Residues	13
Details	binding site for residue PO4 C 306

Chain	Residue
C	ARG45
C	HIS120
C	HIS122
C	ASP124
C	HIS189
C	CYS208
C	ASN220
C	HIS250
C	ZN301
C	ZN302
C	CL303
C	HOH421
C	HOH472

site_id	AE9
Number of Residues	8
Details	binding site for residue EDO C 307

Chain	Residue
C	GLN60
C	THR62
C	GLY69
C	PHE70
C	ALA74
C	ASN76
C	SER251
C	HOH402

site_id	AF1
Number of Residues	6
Details	binding site for residue PEG C 308

Chain	Residue
A	HOH632
C	GLY237
C	ALA238
C	PRO241
C	ARG256
C	HOH445

site_id	AF2
Number of Residues	8
Details	binding site for residue PGE C 309

Chain	Residue
C	LYS181
C	GLY197
C	ILE198
C	ASP199
C	THR201
C	ILE203
C	ALA243
C	CL304

site_id	AF3
Number of Residues	5
Details	binding site for residue GOL C 310

Chain	Residue
C	ASN142
C	LEU144
C	PHE163
C	TYR184
C	HOH490

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PDB entries from 2024-07-17

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