6OFC
Crystal structure of M. tuberculosis glutamine-dependent NAD+ synthetase complexed with Sulfonamide derivative 1, pyrophosphate, and glutamine
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003952 | molecular_function | NAD+ synthase (glutamine-hydrolyzing) activity |
A | 0004359 | molecular_function | glutaminase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0005886 | cellular_component | plasma membrane |
A | 0008795 | molecular_function | NAD+ synthase activity |
A | 0009274 | cellular_component | peptidoglycan-based cell wall |
A | 0009435 | biological_process | NAD biosynthetic process |
A | 0016874 | molecular_function | ligase activity |
A | 0042802 | molecular_function | identical protein binding |
B | 0003952 | molecular_function | NAD+ synthase (glutamine-hydrolyzing) activity |
B | 0004359 | molecular_function | glutaminase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0005886 | cellular_component | plasma membrane |
B | 0008795 | molecular_function | NAD+ synthase activity |
B | 0009274 | cellular_component | peptidoglycan-based cell wall |
B | 0009435 | biological_process | NAD biosynthetic process |
B | 0016874 | molecular_function | ligase activity |
B | 0042802 | molecular_function | identical protein binding |
C | 0003952 | molecular_function | NAD+ synthase (glutamine-hydrolyzing) activity |
C | 0004359 | molecular_function | glutaminase activity |
C | 0005524 | molecular_function | ATP binding |
C | 0005737 | cellular_component | cytoplasm |
C | 0005886 | cellular_component | plasma membrane |
C | 0008795 | molecular_function | NAD+ synthase activity |
C | 0009274 | cellular_component | peptidoglycan-based cell wall |
C | 0009435 | biological_process | NAD biosynthetic process |
C | 0016874 | molecular_function | ligase activity |
C | 0042802 | molecular_function | identical protein binding |
D | 0003952 | molecular_function | NAD+ synthase (glutamine-hydrolyzing) activity |
D | 0004359 | molecular_function | glutaminase activity |
D | 0005524 | molecular_function | ATP binding |
D | 0005737 | cellular_component | cytoplasm |
D | 0005886 | cellular_component | plasma membrane |
D | 0008795 | molecular_function | NAD+ synthase activity |
D | 0009274 | cellular_component | peptidoglycan-based cell wall |
D | 0009435 | biological_process | NAD biosynthetic process |
D | 0016874 | molecular_function | ligase activity |
D | 0042802 | molecular_function | identical protein binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 14 |
Details | binding site for residue SFH A 701 |
Chain | Residue |
A | GLY366 |
A | TRP490 |
A | SER491 |
A | THR492 |
A | ASP497 |
A | HOH803 |
A | VAL367 |
A | SER368 |
A | SER373 |
A | PHE397 |
A | ALA398 |
A | LEU399 |
A | ARG462 |
A | THR480 |
site_id | AC2 |
Number of Residues | 11 |
Details | binding site for residue SFH A 702 |
Chain | Residue |
A | ASN456 |
A | THR492 |
A | TYR493 |
A | PHE634 |
A | LYS635 |
A | SER661 |
D | ARG354 |
D | LEU358 |
D | ASN471 |
D | GLY475 |
D | HIS501 |
site_id | AC3 |
Number of Residues | 17 |
Details | binding site for residue SFH A 703 |
Chain | Residue |
A | ARG354 |
A | LEU358 |
A | ASN471 |
A | GLY475 |
A | ILE476 |
A | HIS501 |
D | ASN456 |
D | GLY489 |
D | SER491 |
D | THR492 |
D | TYR493 |
D | ARG627 |
D | PHE631 |
D | PHE634 |
D | LYS635 |
D | SER661 |
D | SFH701 |
site_id | AC4 |
Number of Residues | 1 |
Details | binding site for residue CL A 705 |
Chain | Residue |
A | MET663 |
site_id | AC5 |
Number of Residues | 16 |
Details | binding site for residue SFH B 701 |
Chain | Residue |
B | GLY366 |
B | VAL367 |
B | SER368 |
B | SER373 |
B | PHE397 |
B | ALA398 |
B | LEU399 |
B | ARG462 |
B | THR480 |
B | TRP490 |
B | SER491 |
B | THR492 |
B | ASP497 |
B | GLU552 |
B | POP705 |
B | HOH806 |
site_id | AC6 |
Number of Residues | 13 |
Details | binding site for residue SFH B 702 |
Chain | Residue |
B | ASN456 |
B | THR492 |
B | TYR493 |
B | PHE631 |
B | PHE634 |
B | LYS635 |
B | SER661 |
B | HOH807 |
C | ARG354 |
C | LEU358 |
C | ASN471 |
C | GLY475 |
C | HIS501 |
site_id | AC7 |
Number of Residues | 10 |
Details | binding site for residue SFH B 703 |
Chain | Residue |
B | ARG354 |
B | LEU358 |
B | ASN471 |
B | GLY475 |
B | ILE476 |
B | HIS501 |
C | ASN456 |
C | TYR493 |
C | PHE634 |
C | LYS635 |
site_id | AC8 |
Number of Residues | 1 |
Details | binding site for residue CL B 704 |
Chain | Residue |
B | MET499 |
site_id | AC9 |
Number of Residues | 10 |
Details | binding site for residue POP B 705 |
Chain | Residue |
B | SER368 |
B | GLY370 |
B | LEU371 |
B | ASP372 |
B | SER373 |
B | GLU541 |
B | GLU552 |
B | GLU553 |
B | LEU554 |
B | SFH701 |
site_id | AD1 |
Number of Residues | 3 |
Details | binding site for residue GLN B 706 |
Chain | Residue |
B | ARG218 |
D | LEU215 |
D | ARG218 |
site_id | AD2 |
Number of Residues | 6 |
Details | binding site for residue GOL B 707 |
Chain | Residue |
A | ASP656 |
B | ASP62 |
B | ARG134 |
A | ARG128 |
A | ARG285 |
A | LEU575 |
site_id | AD3 |
Number of Residues | 13 |
Details | binding site for residue SFH C 701 |
Chain | Residue |
C | GLY366 |
C | VAL367 |
C | SER368 |
C | SER373 |
C | PHE397 |
C | ALA398 |
C | LEU399 |
C | ARG462 |
C | THR480 |
C | TRP490 |
C | SER491 |
C | THR492 |
C | ASP497 |
site_id | AD4 |
Number of Residues | 12 |
Details | binding site for residue GLN C 702 |
Chain | Residue |
C | GLU52 |
C | TYR58 |
C | LYS121 |
C | PRO125 |
C | TYR127 |
C | PHE130 |
C | ALA176 |
C | GLU177 |
C | PHE180 |
C | SER203 |
C | ARG209 |
C | HOH801 |
site_id | AD5 |
Number of Residues | 10 |
Details | binding site for residue SFH D 701 |
Chain | Residue |
A | SFH703 |
D | GLY366 |
D | VAL367 |
D | SER368 |
D | PHE397 |
D | LEU399 |
D | ARG462 |
D | THR480 |
D | TRP490 |
D | THR492 |
site_id | AD6 |
Number of Residues | 3 |
Details | binding site for residue CL D 702 |
Chain | Residue |
D | THR463 |
D | ASP497 |
D | MET499 |
site_id | AD7 |
Number of Residues | 5 |
Details | binding site for residue GLN D 703 |
Chain | Residue |
D | TYR127 |
D | GLU177 |
D | PHE180 |
D | SER203 |
D | ARG209 |
site_id | AD8 |
Number of Residues | 6 |
Details | binding site for residue GOL D 704 |
Chain | Residue |
A | LEU65 |
A | ARG134 |
B | ARG128 |
D | ARG285 |
D | LEU575 |
D | ASP656 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | ACT_SITE: Proton acceptor; for glutaminase activity => ECO:0000255|HAMAP-Rule:MF_02090, ECO:0000305|PubMed:15748981, ECO:0000305|PubMed:19270703 |
Chain | Residue | Details |
A | GLU52 | |
B | GLU52 | |
C | GLU52 | |
D | GLU52 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | ACT_SITE: For glutaminase activity => ECO:0000255|HAMAP-Rule:MF_02090, ECO:0000305|PubMed:15748981, ECO:0000305|PubMed:19270703 |
Chain | Residue | Details |
A | LYS121 | |
B | LYS121 | |
C | LYS121 | |
D | LYS121 |
site_id | SWS_FT_FI3 |
Number of Residues | 4 |
Details | ACT_SITE: Nucleophile; for glutaminase activity => ECO:0000255|HAMAP-Rule:MF_02090, ECO:0000305|PubMed:15748981, ECO:0000305|PubMed:19270703 |
Chain | Residue | Details |
A | ALA176 | |
B | ALA176 | |
C | ALA176 | |
D | ALA176 |
site_id | SWS_FT_FI4 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_02090, ECO:0007744|PDB:3SYT |
Chain | Residue | Details |
A | TYR127 | |
D | TYR127 | |
D | SER203 | |
D | ARG209 | |
A | SER203 | |
A | ARG209 | |
B | TYR127 | |
B | SER203 | |
B | ARG209 | |
C | TYR127 | |
C | SER203 | |
C | ARG209 |
site_id | SWS_FT_FI5 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_02090, ECO:0007744|PDB:3SEQ, ECO:0007744|PDB:3SEZ, ECO:0007744|PDB:3SYT, ECO:0007744|PDB:3SZG |
Chain | Residue | Details |
A | GLY366 | |
B | GLY366 | |
C | GLY366 | |
D | GLY366 |
site_id | SWS_FT_FI6 |
Number of Residues | 4 |
Details | BINDING: in other chain => ECO:0000255|HAMAP-Rule:MF_02090, ECO:0007744|PDB:3DLA, ECO:0007744|PDB:3SEQ, ECO:0007744|PDB:3SEZ, ECO:0007744|PDB:3SZG |
Chain | Residue | Details |
A | ASN456 | |
B | ASN456 | |
C | ASN456 | |
D | ASN456 |
site_id | SWS_FT_FI7 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_02090, ECO:0007744|PDB:3SEQ, ECO:0007744|PDB:3SYT, ECO:0007744|PDB:3SZG |
Chain | Residue | Details |
A | THR480 | |
B | THR480 | |
C | THR480 | |
D | THR480 |
site_id | SWS_FT_FI8 |
Number of Residues | 4 |
Details | BINDING: in other chain => ECO:0000255|HAMAP-Rule:MF_02090, ECO:0007744|PDB:3SEQ, ECO:0007744|PDB:3SEZ, ECO:0007744|PDB:3SYT |
Chain | Residue | Details |
A | GLU485 | |
B | GLU485 | |
C | GLU485 | |
D | GLU485 |
site_id | SWS_FT_FI9 |
Number of Residues | 8 |
Details | BINDING: in other chain => ECO:0000255|HAMAP-Rule:MF_02090, ECO:0007744|PDB:3DLA, ECO:0007744|PDB:3SEQ, ECO:0007744|PDB:3SEZ, ECO:0007744|PDB:3SYT, ECO:0007744|PDB:3SZG |
Chain | Residue | Details |
A | TRP490 | |
A | LYS635 | |
B | TRP490 | |
B | LYS635 | |
C | TRP490 | |
C | LYS635 | |
D | TRP490 | |
D | LYS635 |
site_id | SWS_FT_FI10 |
Number of Residues | 16 |
Details | BINDING: BINDING => ECO:0007744|PDB:3DLA, ECO:0007744|PDB:3SEQ, ECO:0007744|PDB:3SEZ, ECO:0007744|PDB:3SYT, ECO:0007744|PDB:3SZG |
Chain | Residue | Details |
A | ARG354 | |
C | ASN471 | |
C | GLY475 | |
C | HIS501 | |
D | ARG354 | |
D | ASN471 | |
D | GLY475 | |
D | HIS501 | |
A | ASN471 | |
A | GLY475 | |
A | HIS501 | |
B | ARG354 | |
B | ASN471 | |
B | GLY475 | |
B | HIS501 | |
C | ARG354 |
site_id | SWS_FT_FI11 |
Number of Residues | 4 |
Details | BINDING: in other chain => ECO:0007744|PDB:3DLA, ECO:0007744|PDB:3SZG |
Chain | Residue | Details |
A | SER661 | |
B | SER661 | |
C | SER661 | |
D | SER661 |