Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6OCD

Ricin A chain bound to VHH antibody V6D4

Functional Information from GO Data
ChainGOidnamespacecontents
A0017148biological_processnegative regulation of translation
A0030598molecular_functionrRNA N-glycosylase activity
C0017148biological_processnegative regulation of translation
C0030598molecular_functionrRNA N-glycosylase activity
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue ZN A 301
ChainResidue
AGLU102
AHIS106
AIMD303

site_idAC2
Number of Residues2
Detailsbinding site for residue CL A 302
ChainResidue
AARG114
AHOH475

site_idAC3
Number of Residues4
Detailsbinding site for residue IMD A 303
ChainResidue
AGLU102
AHIS106
AZN301
AHOH411

site_idAC4
Number of Residues5
Detailsbinding site for residue EDO A 304
ChainResidue
AASN122
ATYR123
AHOH402
AHOH405
AHOH459

site_idAC5
Number of Residues2
Detailsbinding site for residue ZN C 301
ChainResidue
CGLU102
CHIS106

site_idAC6
Number of Residues1
Detailsbinding site for residue ZN C 302
ChainResidue
CHIS40

site_idAC7
Number of Residues3
Detailsbinding site for residue IMD C 303
ChainResidue
CGLY15
CHIS65
CASN141

site_idAC8
Number of Residues3
Detailsbinding site for residue EDO C 304
ChainResidue
CASN122
CTYR123
CHOH404

site_idAC9
Number of Residues5
Detailsbinding site for residue EDO C 305
ChainResidue
CGLN5
CTYR6
CHIS106
CPHE108
CTHR109

Functional Information from PROSITE/UniProt
site_idPS00275
Number of Residues17
DetailsSHIGA_RICIN Shiga/ricin ribosomal inactivating toxins active site signature. IqMIsEAARFQyIEgeM
ChainResidueDetails
AILE172-MET188

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsActive site: {"evidences":[{"source":"UniProtKB","id":"P84531","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues18
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"8780513","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1OBT","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues2
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","featureId":"CAR_000080","evidences":[{"source":"PubMed","id":"1368517","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues2
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine; partial","featureId":"CAR_000081","evidences":[{"source":"PubMed","id":"1368517","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

239803

PDB entries from 2025-08-06

PDB statisticsPDBj update infoContact PDBjnumon