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6OBO

Ricin A chain bound to VHH antibody V6A6

Functional Information from GO Data
ChainGOidnamespacecontents
A0017148biological_processnegative regulation of translation
A0030598molecular_functionrRNA N-glycosylase activity
B0017148biological_processnegative regulation of translation
B0030598molecular_functionrRNA N-glycosylase activity
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue EDO B 301
ChainResidue
AGLY158
ATHR159
AHOH392
BGLU146
BARG166
BSER167
BHOH743

site_idAC2
Number of Residues8
Detailsbinding site for residue ACY C 201
ChainResidue
CACY202
CACY203
CCA204
CHOH348
DACY201
DACY203
CTHR57
CTYR59

site_idAC3
Number of Residues7
Detailsbinding site for residue ACY C 202
ChainResidue
CTHR57
CACY201
CACY203
CCA204
CHOH311
CHOH370
DACY201

site_idAC4
Number of Residues8
Detailsbinding site for residue ACY C 203
ChainResidue
CGLY55
CARG56
CTHR57
CACY201
CACY202
CCA204
CHOH332
DACY202

site_idAC5
Number of Residues4
Detailsbinding site for residue CA C 204
ChainResidue
CTHR57
CACY201
CACY202
CACY203

site_idAC6
Number of Residues8
Detailsbinding site for residue EDO C 205
ChainResidue
BASN136
CARG19
CTHR68
CILE69
CSER70
CSER79
CGLN81
CHOH301

site_idAC7
Number of Residues8
Detailsbinding site for residue ACY D 201
ChainResidue
CACY201
CACY202
DTHR57
DTYR59
DACY202
DACY203
DCA204
DHOH370

site_idAC8
Number of Residues9
Detailsbinding site for residue ACY D 202
ChainResidue
CACY203
DGLY55
DARG56
DTHR57
DACY201
DACY203
DCA204
DHOH308
DHOH340

site_idAC9
Number of Residues6
Detailsbinding site for residue ACY D 203
ChainResidue
CACY201
DTHR57
DACY201
DACY202
DCA204
DHOH341

site_idAD1
Number of Residues4
Detailsbinding site for residue CA D 204
ChainResidue
DTHR57
DACY201
DACY202
DACY203

site_idAD2
Number of Residues3
Detailsbinding site for residue EDO D 205
ChainResidue
DSER70
DTHR77
DSER79

Functional Information from PROSITE/UniProt
site_idPS00275
Number of Residues17
DetailsSHIGA_RICIN Shiga/ricin ribosomal inactivating toxins active site signature. IqMIsEAARFQyIEgeM
ChainResidueDetails
AILE172-MET188

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsActive site: {"evidences":[{"source":"UniProtKB","id":"P84531","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues18
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"8780513","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1OBT","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues2
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","featureId":"CAR_000080","evidences":[{"source":"PubMed","id":"1368517","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues2
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine; partial","featureId":"CAR_000081","evidences":[{"source":"PubMed","id":"1368517","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

239149

PDB entries from 2025-07-23

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