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6OBE

Ricin A chain bound to VHH antibody V6H8

Functional Information from GO Data
ChainGOidnamespacecontents
A0017148biological_processnegative regulation of translation
A0030598molecular_functionrRNA N-glycosylase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue NI A 301
ChainResidue
AHIS40
AHIS94
APHE267
AIMD306

site_idAC2
Number of Residues4
Detailsbinding site for residue NI A 302
ChainResidue
AGLU102
AGLU102
AHIS106
AHIS106

site_idAC3
Number of Residues6
Detailsbinding site for residue EDO A 303
ChainResidue
AASP96
AASN97
AASP100
AEDO304
BARG102
APRO95

site_idAC4
Number of Residues7
Detailsbinding site for residue EDO A 304
ChainResidue
AASP75
AVAL82
AASP100
AEDO303
AHOH458
AHOH468
BTYR103

site_idAC5
Number of Residues6
Detailsbinding site for residue EDO A 305
ChainResidue
ATHR163
AARG166
ASER167
AILE170
AHOH524
AHOH587

site_idAC6
Number of Residues8
Detailsbinding site for residue IMD A 306
ChainResidue
AHIS40
AGLU41
AHIS94
ATHR116
AGLN223
AVAL245
APHE267
ANI301

Functional Information from PROSITE/UniProt
site_idPS00275
Number of Residues17
DetailsSHIGA_RICIN Shiga/ricin ribosomal inactivating toxins active site signature. IqMIsEAARFQyIEgeM
ChainResidueDetails
AILE172-MET188

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: ACT_SITE => ECO:0000250|UniProtKB:P84531
ChainResidueDetails
ATYR80
ATYR123
AGLU177
AARG180

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AILE8

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AGLY15
AGLY50
AASN141
AASN195

site_idSWS_FT_FI4
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:8780513, ECO:0007744|PDB:1OBT
ChainResidueDetails
ATYR80
AGLY121

site_idSWS_FT_FI5
Number of Residues1
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:1368517
ChainResidueDetails
AASN10

site_idSWS_FT_FI6
Number of Residues1
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine; partial => ECO:0000269|PubMed:1368517
ChainResidueDetails
AASN236

219140

PDB entries from 2024-05-01

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