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6OBE

Ricin A chain bound to VHH antibody V6H8

Functional Information from GO Data
ChainGOidnamespacecontents
A0017148biological_processnegative regulation of translation
A0030598molecular_functionrRNA N-glycosylase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue NI A 301
ChainResidue
AHIS40
AHIS94
APHE267
AIMD306

site_idAC2
Number of Residues4
Detailsbinding site for residue NI A 302
ChainResidue
AGLU102
AGLU102
AHIS106
AHIS106

site_idAC3
Number of Residues6
Detailsbinding site for residue EDO A 303
ChainResidue
AASP96
AASN97
AASP100
AEDO304
BARG102
APRO95

site_idAC4
Number of Residues7
Detailsbinding site for residue EDO A 304
ChainResidue
AASP75
AVAL82
AASP100
AEDO303
AHOH458
AHOH468
BTYR103

site_idAC5
Number of Residues6
Detailsbinding site for residue EDO A 305
ChainResidue
ATHR163
AARG166
ASER167
AILE170
AHOH524
AHOH587

site_idAC6
Number of Residues8
Detailsbinding site for residue IMD A 306
ChainResidue
AHIS40
AGLU41
AHIS94
ATHR116
AGLN223
AVAL245
APHE267
ANI301

Functional Information from PROSITE/UniProt
site_idPS00275
Number of Residues17
DetailsSHIGA_RICIN Shiga/ricin ribosomal inactivating toxins active site signature. IqMIsEAARFQyIEgeM
ChainResidueDetails
AILE172-MET188

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsActive site: {"evidences":[{"source":"UniProtKB","id":"P84531","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues9
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"8780513","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1OBT","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","featureId":"CAR_000080","evidences":[{"source":"PubMed","id":"1368517","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine; partial","featureId":"CAR_000081","evidences":[{"source":"PubMed","id":"1368517","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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