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6NRZ

Crystal Structure of Lysyl-tRNA Synthetase from Chlamydia trachomatis complexed with L-lysine and Adenosine

Functional Information from GO Data
ChainGOidnamespacecontents
A0000049molecular_functiontRNA binding
A0000166molecular_functionnucleotide binding
A0000287molecular_functionmagnesium ion binding
A0003676molecular_functionnucleic acid binding
A0004812molecular_functionaminoacyl-tRNA ligase activity
A0004824molecular_functionlysine-tRNA ligase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006412biological_processtranslation
A0006418biological_processtRNA aminoacylation for protein translation
A0006430biological_processlysyl-tRNA aminoacylation
A0046872molecular_functionmetal ion binding
B0000049molecular_functiontRNA binding
B0000166molecular_functionnucleotide binding
B0000287molecular_functionmagnesium ion binding
B0003676molecular_functionnucleic acid binding
B0004812molecular_functionaminoacyl-tRNA ligase activity
B0004824molecular_functionlysine-tRNA ligase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006412biological_processtranslation
B0006418biological_processtRNA aminoacylation for protein translation
B0006430biological_processlysyl-tRNA aminoacylation
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues11
Detailsbinding site for residue LYS A 601
ChainResidue
AGLY225
AGLY493
AADN602
AGLU249
AARG271
AGLU287
ATYR289
AASN441
ATYR443
AGLU445
AGLY491

site_idAC2
Number of Residues14
Detailsbinding site for residue ADN A 602
ChainResidue
AARG271
ATHR278
AHIS279
AASN280
APHE283
AMET285
AGLU438
ALEU439
ACYS440
AGLY495
AARG498
AILE509
ALYS601
AHOH821

site_idAC3
Number of Residues4
Detailsbinding site for residue EDO A 603
ChainResidue
APHE76
AILE120
AGLU121
ALEU124

site_idAC4
Number of Residues2
Detailsbinding site for residue EDO A 604
ChainResidue
AILE183
AHOH948

site_idAC5
Number of Residues2
Detailsbinding site for residue EDO A 605
ChainResidue
AARG197
ALYS200

site_idAC6
Number of Residues4
Detailsbinding site for residue EDO A 606
ChainResidue
AGLU213
AGLU215
AHOH776
BARG203

site_idAC7
Number of Residues12
Detailsbinding site for residue PG4 A 607
ChainResidue
AGLY225
AALA226
AGLU227
ATHR412
ATHR413
APRO414
AARG429
ATYR443
AGLN459
AASP475
AHOH798
AHOH806

site_idAC8
Number of Residues6
Detailsbinding site for residue EDO A 608
ChainResidue
APHE391
AASP392
AGLU431
AHOH710
AHOH941
AHOH946

site_idAC9
Number of Residues4
Detailsbinding site for residue EDO A 609
ChainResidue
ATYR322
ALEU325
ALEU435
ALYS437

site_idAD1
Number of Residues7
Detailsbinding site for residue EDO A 610
ChainResidue
ALYS344
AILE387
ATHR425
ALEU426
AHOH708
AHOH784
AHOH786

site_idAD2
Number of Residues7
Detailsbinding site for residue EDO A 611
ChainResidue
ALEU450
AARG453
ACYS483
AHOH877
BTYR7
BLEU8
BTYR13

site_idAD3
Number of Residues6
Detailsbinding site for residue EDO A 612
ChainResidue
AGLN220
AALA251
ALYS254
AEDO613
AHOH701
AHOH905

site_idAD4
Number of Residues7
Detailsbinding site for residue EDO A 613
ChainResidue
ALEU219
AGLN220
AMET242
AEDO612
AHOH722
AHOH832
BPHE515

site_idAD5
Number of Residues6
Detailsbinding site for residue EDO A 614
ChainResidue
ALYS344
AASP354
AVAL355
AASP356
AHOH746
AHOH898

site_idAD6
Number of Residues3
Detailsbinding site for residue EDO A 615
ChainResidue
ALYS200
AGLU204
AHOH757

site_idAD7
Number of Residues8
Detailsbinding site for residue EDO A 616
ChainResidue
BLEU219
BGLN220
BMET242
BEDO1712
APHE515
APRO516
AHOH763
AHOH822

site_idAD8
Number of Residues3
Detailsbinding site for residue EDO A 617
ChainResidue
AGLU480
BILE159
BHOH1857

site_idAD9
Number of Residues5
Detailsbinding site for residue NA A 618
ChainResidue
ALYS463
AASN466
ASER469
AHOH969
AHOH987

site_idAE1
Number of Residues5
Detailsbinding site for residue NA A 619
ChainResidue
AGLU368
ATHR371
AHOH719
AHOH972
AHOH1004

site_idAE2
Number of Residues4
Detailsbinding site for residue EDO B 1701
ChainResidue
AARG203
BGLU213
BGLU215
BHOH1924

site_idAE3
Number of Residues10
Detailsbinding site for residue LYS B 1702
ChainResidue
BGLY225
BSER247
BGLU249
BARG271
BGLU287
BTYR289
BASN441
BTYR443
BGLU445
BADN1703

site_idAE4
Number of Residues14
Detailsbinding site for residue ADN B 1703
ChainResidue
BARG271
BTHR278
BHIS279
BASN280
BPHE283
BMET285
BGLU438
BLEU439
BCYS440
BGLY495
BARG498
BILE509
BLYS1702
BHOH1919

site_idAE5
Number of Residues4
Detailsbinding site for residue EDO B 1704
ChainResidue
BASN304
BGLU307
BTYR308
BARG311

site_idAE6
Number of Residues4
Detailsbinding site for residue EDO B 1705
ChainResidue
BASP392
BGLU431
BHOH1831
BHOH1837

site_idAE7
Number of Residues3
Detailsbinding site for residue EDO B 1706
ChainResidue
BARG24
BASN29
BHOH1884

site_idAE8
Number of Residues7
Detailsbinding site for residue EDO B 1707
ChainResidue
ATYR7
ALEU8
ATYR13
BPRO449
BLEU450
BARG453
BCYS483

site_idAE9
Number of Residues10
Detailsbinding site for residue PG4 B 1708
ChainResidue
BTYR223
BGLY225
BALA226
BTHR412
BTHR413
BPRO414
BLEU415
BTYR443
BGLN459
BASP475

site_idAF1
Number of Residues7
Detailsbinding site for residue EDO B 1709
ChainResidue
BPHE76
BILE120
BGLU121
BLEU124
BASP125
BHOH1801
BHOH1907

site_idAF2
Number of Residues5
Detailsbinding site for residue EDO B 1710
ChainResidue
BLYS164
BILE183
BSER184
BHOH1804
BHOH1815

site_idAF3
Number of Residues5
Detailsbinding site for residue EDO B 1711
ChainResidue
AHOH780
BPRO162
BASP170
BARG174
BHOH1891

site_idAF4
Number of Residues5
Detailsbinding site for residue EDO B 1712
ChainResidue
APHE515
AEDO616
BGLN220
BALA251
BLYS254

site_idAF5
Number of Residues4
Detailsbinding site for residue EDO B 1713
ChainResidue
BPRO32
BTYR33
BGLN34
BHOH1825

site_idAF6
Number of Residues3
Detailsbinding site for residue EDO B 1714
ChainResidue
BILE28
BASN29
BHOH1847

site_idAF7
Number of Residues3
Detailsbinding site for residue EDO B 1715
ChainResidue
BHIS10
BGLU11
BASP12

site_idAF8
Number of Residues3
Detailsbinding site for residue EDO B 1716
ChainResidue
BLYS344
BARG383
BTHR425

site_idAF9
Number of Residues4
Detailsbinding site for residue EDO B 1717
ChainResidue
BGLU303
BPRO337
BTRP338
BARG340

site_idAG1
Number of Residues1
Detailsbinding site for residue CL B 1718
ChainResidue
BLEU168

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00252
ChainResidueDetails
AGLU431
AGLU438
BGLU431
BGLU438

227344

PDB entries from 2024-11-13

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