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6NLW

The crystal structure of class D carbapenem-hydrolyzing beta-lactamase BlaA from Shewanella oneidensis MR-1

Functional Information from GO Data
ChainGOidnamespacecontents
A0008658molecular_functionpenicillin binding
A0008800molecular_functionbeta-lactamase activity
A0016787molecular_functionhydrolase activity
A0017001biological_processantibiotic catabolic process
A0046677biological_processresponse to antibiotic
A0071555biological_processcell wall organization
B0008658molecular_functionpenicillin binding
B0008800molecular_functionbeta-lactamase activity
B0016787molecular_functionhydrolase activity
B0017001biological_processantibiotic catabolic process
B0046677biological_processresponse to antibiotic
B0071555biological_processcell wall organization
C0008658molecular_functionpenicillin binding
C0008800molecular_functionbeta-lactamase activity
C0016787molecular_functionhydrolase activity
C0017001biological_processantibiotic catabolic process
C0046677biological_processresponse to antibiotic
C0071555biological_processcell wall organization
D0008658molecular_functionpenicillin binding
D0008800molecular_functionbeta-lactamase activity
D0016787molecular_functionhydrolase activity
D0017001biological_processantibiotic catabolic process
D0046677biological_processresponse to antibiotic
D0071555biological_processcell wall organization
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue GOL A 301
ChainResidue
ALYS94
AASP96
APRO121
AHOH408
AHOH412
AHOH435
AHOH441

site_idAC2
Number of Residues2
Detailsbinding site for residue GOL A 302
ChainResidue
AASP229
AASP230

site_idAC3
Number of Residues10
Detailsbinding site for residue SO4 A 303
ChainResidue
ASER70
ASER118
ALYS208
ATHR209
AGLY210
ATYR211
AARG250
AHOH411
AHOH436
AHOH530

site_idAC4
Number of Residues3
Detailsbinding site for residue SO4 A 304
ChainResidue
ALYS28
APRO29
ASER30

site_idAC5
Number of Residues7
Detailsbinding site for residue SO4 A 305
ChainResidue
ALYS60
AHOH404
AHOH429
DGLN124
DSER155
DARG214
DSO4307

site_idAC6
Number of Residues5
Detailsbinding site for residue SO4 A 306
ChainResidue
AGLN124
ASER155
AARG214
AHOH405
BHIS182

site_idAC7
Number of Residues5
Detailsbinding site for residue SO4 A 307
ChainResidue
AGLU198
ATYR203
ALYS255
ALYS259
AHOH406

site_idAC8
Number of Residues3
Detailsbinding site for residue SO4 A 308
ChainResidue
ASER150
AGLY151
BHIS140

site_idAC9
Number of Residues8
Detailsbinding site for residue SO4 A 309
ChainResidue
AGLY131
AGLN132
AALA133
AHOH432
AHOH452
AHOH534
BARG134
BLYS137

site_idAD1
Number of Residues3
Detailsbinding site for residue CL A 310
ChainResidue
ALYS73
ATRP157
AHOH539

site_idAD2
Number of Residues5
Detailsbinding site for residue FMT A 311
ChainResidue
AASN48
ALYS51
AASN231
AHOH442
AHOH455

site_idAD3
Number of Residues2
Detailsbinding site for residue FMT A 312
ChainResidue
APHE55
AGLU261

site_idAD4
Number of Residues5
Detailsbinding site for residue FMT A 313
ChainResidue
AGLU198
AALA199
BGLU198
BALA199
BASN200

site_idAD5
Number of Residues1
Detailsbinding site for residue FMT A 314
ChainResidue
AASP230

site_idAD6
Number of Residues6
Detailsbinding site for residue GOL B 301
ChainResidue
BLYS94
BTRP95
BASP96
BARG100
BHOH411
BHOH469

site_idAD7
Number of Residues5
Detailsbinding site for residue SO4 B 302
ChainResidue
BASN48
BLYS51
BASN231
BTRP233
BHOH402

site_idAD8
Number of Residues9
Detailsbinding site for residue SO4 B 303
ChainResidue
BSER70
BSER118
BLYS208
BTHR209
BGLY210
BTYR211
BARG250
BHOH408
BHOH416

site_idAD9
Number of Residues4
Detailsbinding site for residue SO4 B 304
ChainResidue
BGLN124
BARG214
BPEG313
BHOH425

site_idAE1
Number of Residues5
Detailsbinding site for residue SO4 B 305
ChainResidue
AGLN193
AARG206
BGLN193
BARG206
BHOH442

site_idAE2
Number of Residues3
Detailsbinding site for residue SO4 B 306
ChainResidue
AHIS90
BHIS178
BHOH441

site_idAE3
Number of Residues3
Detailsbinding site for residue SO4 B 307
ChainResidue
BPRO29
BSER30
BLYS28

site_idAE4
Number of Residues4
Detailsbinding site for residue SO4 B 308
ChainResidue
BGLY131
BGLN132
BALA133
BHOH418

site_idAE5
Number of Residues2
Detailsbinding site for residue CL B 309
ChainResidue
BLYS73
BTRP157

site_idAE6
Number of Residues3
Detailsbinding site for residue CL B 310
ChainResidue
BALA65
BARG163
BHOH509

site_idAE7
Number of Residues3
Detailsbinding site for residue FMT B 311
ChainResidue
ATHR113
BASP229
BASP230

site_idAE8
Number of Residues1
Detailsbinding site for residue FMT B 312
ChainResidue
BPHE55

site_idAE9
Number of Residues5
Detailsbinding site for residue PEG B 313
ChainResidue
BGLN98
BARG100
BGLN124
BSO4304
BHOH417

site_idAF1
Number of Residues7
Detailsbinding site for residue GOL C 301
ChainResidue
CLYS94
CTRP95
CASP96
CPRO121
CHOH429
CHOH438
CHOH470

site_idAF2
Number of Residues10
Detailsbinding site for residue SO4 C 302
ChainResidue
CSER70
CSER118
CLYS208
CTHR209
CGLY210
CTYR211
CARG250
CHOH402
CHOH404
CHOH480

site_idAF3
Number of Residues3
Detailsbinding site for residue SO4 C 303
ChainResidue
CLYS28
CPRO29
CSER30

site_idAF4
Number of Residues3
Detailsbinding site for residue SO4 C 304
ChainResidue
CGLN132
CHOH493
DARG134

site_idAF5
Number of Residues2
Detailsbinding site for residue SO4 C 305
ChainResidue
CGLN124
CARG214

site_idAF6
Number of Residues4
Detailsbinding site for residue CL C 306
ChainResidue
CLYS73
CTYR123
CTRP157
CHOH474

site_idAF7
Number of Residues3
Detailsbinding site for residue CL C 307
ChainResidue
CMET241
CPRO242
CTHR243

site_idAF8
Number of Residues3
Detailsbinding site for residue FMT C 308
ChainResidue
CPHE35
CGLY42
CASN58

site_idAF9
Number of Residues6
Detailsbinding site for residue FMT C 309
ChainResidue
CASP143
CTYR144
CGLY145
CGLU168
CALA171
CHOH419

site_idAG1
Number of Residues7
Detailsbinding site for residue GOL D 301
ChainResidue
DLYS94
DASP96
DPRO121
DVAL122
DHOH404
DHOH452
DHOH456

site_idAG2
Number of Residues10
Detailsbinding site for residue SO4 D 302
ChainResidue
DSER70
DSER118
DLYS208
DTHR209
DGLY210
DTYR211
DARG250
DHOH427
DHOH430
DHOH449

site_idAG3
Number of Residues5
Detailsbinding site for residue SO4 D 303
ChainResidue
CGLN193
CLEU196
CARG206
DGLN193
DARG206

site_idAG4
Number of Residues3
Detailsbinding site for residue SO4 D 304
ChainResidue
DLYS28
DPRO29
DSER30

site_idAG5
Number of Residues5
Detailsbinding site for residue SO4 D 305
ChainResidue
DASN48
DLYS51
DASN231
DHOH401
DHOH451

site_idAG6
Number of Residues5
Detailsbinding site for residue SO4 D 306
ChainResidue
DGLY131
DGLN132
DALA133
DHOH403
DHOH470

site_idAG7
Number of Residues4
Detailsbinding site for residue SO4 D 307
ChainResidue
ASO4305
DGLN98
DARG100
DGLN124

site_idAG8
Number of Residues3
Detailsbinding site for residue SO4 D 308
ChainResidue
DTYR203
DLYS255
DLYS259

site_idAG9
Number of Residues6
Detailsbinding site for residue SO4 D 309
ChainResidue
CGLN98
CARG100
CARG128
DSER184
DGLU185
DHOH510

site_idAH1
Number of Residues2
Detailsbinding site for residue CL D 310
ChainResidue
DLYS73
DTRP157

site_idAH2
Number of Residues5
Detailsbinding site for residue FMT D 311
ChainResidue
DALA65
DGLY145
DASN146
DGLU168
DHOH471

site_idAH3
Number of Residues5
Detailsbinding site for residue MLA D 312
ChainResidue
CGLU89
CHIS90
DTYR177
DHIS178
DASN179

Functional Information from PROSITE/UniProt
site_idPS00337
Number of Residues11
DetailsBETA_LACTAMASE_D Beta-lactamase class-D active site. PaSTFKIPnSL
ChainResidueDetails
APRO68-LEU78

221051

PDB entries from 2024-06-12

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