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6NFT

Structure of USP5 zinc-finger ubiquitin binding domain co-crystallized with (4-oxoquinazolin-3(4H)-yl)acetic acid

Functional Information from GO Data
ChainGOidnamespacecontents
A0008270molecular_functionzinc ion binding
B0008270molecular_functionzinc ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 301
ChainResidue
ACYS199
ACYS202
ACYS219
AHIS232

site_idAC2
Number of Residues10
Detailsbinding site for residue KKG A 302
ChainResidue
ATYR261
AMET266
AHOH435
AHOH444
AHOH482
ATRP209
AGLY220
AARG221
ATYR223
ATYR259

site_idAC3
Number of Residues4
Detailsbinding site for residue EDO A 303
ChainResidue
AVAL176
AGLU263
AVAL267
AHOH440

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN B 301
ChainResidue
BCYS199
BCYS202
BCYS219
BHIS232

site_idAC5
Number of Residues10
Detailsbinding site for residue KKG B 302
ChainResidue
BTRP209
BGLY220
BARG221
BTYR223
BALA233
BTYR259
BTYR261
BHOH425
BHOH432
BHOH458

site_idAC6
Number of Residues7
Detailsbinding site for residue EDO B 303
ChainResidue
AHOH422
BLEU186
BASP187
BASN188
BPRO189
BASP214
BHOH465

site_idAC7
Number of Residues5
Detailsbinding site for residue EDO B 304
ChainResidue
BGLN175
BVAL176
BGLU263
BASP265
BHOH442

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues216
DetailsZinc finger: {"description":"UBP-type; degenerate","evidences":[{"source":"PROSITE-ProRule","id":"PRU00502","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00502","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues14
DetailsBinding site: {}
ChainResidueDetails

246031

PDB entries from 2025-12-10

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