6NAB
Crystal structure of prolyl-tRNA synthetase from Naegleria fowleri in complex with proline and adenosine monophophsphate (AMP)
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
A | 0004827 | molecular_function | proline-tRNA ligase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0006418 | biological_process | tRNA aminoacylation for protein translation |
A | 0006433 | biological_process | prolyl-tRNA aminoacylation |
A | 0017101 | cellular_component | aminoacyl-tRNA synthetase multienzyme complex |
B | 0000166 | molecular_function | nucleotide binding |
B | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
B | 0004827 | molecular_function | proline-tRNA ligase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0006418 | biological_process | tRNA aminoacylation for protein translation |
B | 0006433 | biological_process | prolyl-tRNA aminoacylation |
B | 0017101 | cellular_component | aminoacyl-tRNA synthetase multienzyme complex |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 19 |
Details | binding site for residue AMP A 601 |
Chain | Residue |
A | ARG142 |
A | THR230 |
A | GLY262 |
A | LEU263 |
A | SER264 |
A | ARG266 |
A | PRO602 |
A | HOH701 |
A | HOH733 |
A | HOH798 |
A | HOH852 |
A | GLU144 |
A | PHE151 |
A | ILE152 |
A | ARG153 |
A | SER154 |
A | PHE157 |
A | GLN227 |
A | GLY229 |
site_id | AC2 |
Number of Residues | 11 |
Details | binding site for residue PRO A 602 |
Chain | Residue |
A | THR111 |
A | GLU113 |
A | ARG142 |
A | TRP159 |
A | GLU161 |
A | PHE206 |
A | HIS232 |
A | SER260 |
A | TRP261 |
A | GLY262 |
A | AMP601 |
site_id | AC3 |
Number of Residues | 6 |
Details | binding site for residue MG A 603 |
Chain | Residue |
A | HOH701 |
A | HOH714 |
A | HOH733 |
A | HOH780 |
A | HOH1008 |
A | HOH1111 |
site_id | AC4 |
Number of Residues | 5 |
Details | binding site for residue EDO A 604 |
Chain | Residue |
A | ARG286 |
A | LYS387 |
A | ASP391 |
A | HOH784 |
A | HOH809 |
site_id | AC5 |
Number of Residues | 8 |
Details | binding site for residue EDO A 605 |
Chain | Residue |
A | TYR30 |
A | TYR31 |
A | VAL33 |
A | SER34 |
A | GLY35 |
A | CYS36 |
A | TYR37 |
B | HIS492 |
site_id | AC6 |
Number of Residues | 5 |
Details | binding site for residue EDO A 606 |
Chain | Residue |
A | ARG367 |
A | GLU372 |
A | TRP374 |
A | LYS392 |
A | HOH876 |
site_id | AC7 |
Number of Residues | 4 |
Details | binding site for residue EDO A 607 |
Chain | Residue |
A | PHE14 |
A | SER15 |
A | TYR505 |
A | HOH777 |
site_id | AC8 |
Number of Residues | 7 |
Details | binding site for residue EDO A 608 |
Chain | Residue |
A | VAL274 |
A | GLY276 |
A | ASP277 |
A | LYS400 |
A | HOH773 |
A | HOH822 |
A | HOH908 |
site_id | AC9 |
Number of Residues | 5 |
Details | binding site for residue EDO A 609 |
Chain | Residue |
A | ARG40 |
A | PRO41 |
A | HOH855 |
A | HOH923 |
B | LEU132 |
site_id | AD1 |
Number of Residues | 3 |
Details | binding site for residue EDO A 610 |
Chain | Residue |
A | LYS74 |
A | TRP93 |
B | GLY98 |
site_id | AD2 |
Number of Residues | 19 |
Details | binding site for residue AMP B 601 |
Chain | Residue |
B | ARG142 |
B | GLU144 |
B | PHE151 |
B | ILE152 |
B | ARG153 |
B | SER154 |
B | PHE157 |
B | GLN227 |
B | GLY229 |
B | THR230 |
B | GLY262 |
B | LEU263 |
B | SER264 |
B | ARG266 |
B | PRO602 |
B | HOH707 |
B | HOH786 |
B | HOH849 |
B | HOH941 |
site_id | AD3 |
Number of Residues | 11 |
Details | binding site for residue PRO B 602 |
Chain | Residue |
B | SER260 |
B | TRP261 |
B | GLY262 |
B | AMP601 |
B | THR111 |
B | GLU113 |
B | ARG142 |
B | TRP159 |
B | GLU161 |
B | PHE206 |
B | HIS232 |
site_id | AD4 |
Number of Residues | 6 |
Details | binding site for residue MG B 603 |
Chain | Residue |
B | HOH707 |
B | HOH761 |
B | HOH786 |
B | HOH788 |
B | HOH949 |
B | HOH1053 |
site_id | AD5 |
Number of Residues | 4 |
Details | binding site for residue EDO B 604 |
Chain | Residue |
B | ARG286 |
B | LYS387 |
B | ASP391 |
B | HOH746 |
site_id | AD6 |
Number of Residues | 7 |
Details | binding site for residue EDO B 605 |
Chain | Residue |
B | TYR30 |
B | TYR31 |
B | VAL33 |
B | SER34 |
B | GLY35 |
B | CYS36 |
B | TYR37 |
site_id | AD7 |
Number of Residues | 4 |
Details | binding site for residue EDO B 606 |
Chain | Residue |
B | ARG367 |
B | GLU372 |
B | TRP374 |
B | LYS392 |
site_id | AD8 |
Number of Residues | 7 |
Details | binding site for residue EDO B 607 |
Chain | Residue |
B | PHE14 |
B | SER15 |
B | TYR18 |
B | MET273 |
B | TYR505 |
B | HOH732 |
B | HOH816 |
site_id | AD9 |
Number of Residues | 7 |
Details | binding site for residue EDO B 608 |
Chain | Residue |
B | LYS10 |
B | VAL274 |
B | GLY276 |
B | LYS400 |
B | HOH752 |
B | HOH799 |
B | HOH834 |
site_id | AE1 |
Number of Residues | 5 |
Details | binding site for residue EDO B 609 |
Chain | Residue |
A | TRP123 |
A | LEU132 |
B | ARG40 |
B | PRO41 |
B | HOH888 |