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6N4M

IDS-oxidized ADP-bound form of the nitrogenase Fe-protein from A. vinelandii

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0005524molecular_functionATP binding
A0009399biological_processnitrogen fixation
A0016163molecular_functionnitrogenase activity
A0016491molecular_functionoxidoreductase activity
A0018697molecular_functioncarbonyl sulfide nitrogenase activity
A0046872molecular_functionmetal ion binding
A0051536molecular_functioniron-sulfur cluster binding
A0051539molecular_function4 iron, 4 sulfur cluster binding
Functional Information from PDB Data
site_idAC1
Number of Residues21
Detailsbinding site for residue ADP A 301
ChainResidue
AGLY12
AARG213
AASP214
AVAL217
AGLN218
AGLU221
AGLN236
AMG302
AHOH416
AHOH425
AHOH441
AILE13
AHOH469
AHOH516
AGLY14
ALYS15
ASER16
ATHR17
AMET156
AASN185
APRO212

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 302
ChainResidue
ASER16
AADP301
AHOH416
AHOH425
AHOH441
AHOH446

site_idAC3
Number of Residues3
Detailsbinding site for residue SF4 A 303
ChainResidue
ACYS97
ACYS132
AGLY133

Functional Information from PROSITE/UniProt
site_idPS00692
Number of Residues14
DetailsNIFH_FRXC_2 NifH/frxC family signature 2. DvLGDVVCGGFAmP
ChainResidueDetails
AASP125-PRO138

site_idPS00746
Number of Residues13
DetailsNIFH_FRXC_1 NifH/frxC family signature 1. EsGGPepGvGCAG
ChainResidueDetails
AGLU87-GLY99

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsBINDING:
ChainResidueDetails
AGLY9
ACYS97
ACYS132

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: ADP-ribosylarginine; by dinitrogenase reductase ADP-ribosyltransferase => ECO:0000250
ChainResidueDetails
AARG100

Catalytic Information from CSA
site_idMCSA1
Number of Residues4
DetailsM-CSA 212
ChainResidueDetails
ALYS10electrostatic stabiliser, hydrogen bond donor
ALYS15electrostatic stabiliser, hydrogen bond donor
ALYS41electrostatic stabiliser, hydrogen bond donor
AASP129hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

218853

PDB entries from 2024-04-24

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