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6N2F

Meso-Diaminopimelate Decarboxylase from Arabidopsis thaliana (Isoform 2)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0008836molecular_functiondiaminopimelate decarboxylase activity
A0009089biological_processlysine biosynthetic process via diaminopimelate
B0003824molecular_functioncatalytic activity
B0008836molecular_functiondiaminopimelate decarboxylase activity
B0009089biological_processlysine biosynthetic process via diaminopimelate
Functional Information from PDB Data
site_idAC1
Number of Residues21
Detailsbinding site for Di-peptide PLP B 501 and LYS B 502
ChainResidue
ACYS367
BGLY259
BGLY260
BGLU296
BPRO297
BGLY298
BARG299
BARG335
BTYR339
BTYR396
BHOH605
AGLU368
BHOH617
BHOH624
ATYR404
BALA79
BLYS81
BASN123
BVAL182
BHIS220
BSER223

Functional Information from PROSITE/UniProt
site_idPS00878
Number of Residues19
DetailsODR_DC_2_1 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. YAiKANnnlkILehLrslG
ChainResidueDetails
ATYR78-GLY96

site_idPS00879
Number of Residues14
DetailsODR_DC_2_2 Orn/DAP/Arg decarboxylases family 2 signature 2. Gfe....VsYLNIGGGLG
ChainResidueDetails
AGLY249-GLY262

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor => ECO:0000255
ChainResidueDetails
ACYS367
BCYS367

site_idSWS_FT_FI2
Number of Residues14
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AGLY260
BARG299
BARG335
BTYR339
BGLU368
BTYR396
AGLU296
AARG299
AARG335
ATYR339
AGLU368
ATYR396
BGLY260
BGLU296

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000250
ChainResidueDetails
ALYS81
BLYS81

237735

PDB entries from 2025-06-18

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