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6N10

Crystal structure of Arabidopsis thaliana mevalonate 5-diphosphate decarboxylase 1 complexed with (R)-MVAPP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004163molecular_functiondiphosphomevalonate decarboxylase activity
A0005524molecular_functionATP binding
A0005777cellular_componentperoxisome
A0005829cellular_componentcytosol
A0006629biological_processlipid metabolic process
A0006694biological_processsteroid biosynthetic process
A0008202biological_processsteroid metabolic process
A0008299biological_processisoprenoid biosynthetic process
A0016126biological_processsterol biosynthetic process
A0016829molecular_functionlyase activity
A0016831molecular_functioncarboxy-lyase activity
A0019287biological_processisopentenyl diphosphate biosynthetic process, mevalonate pathway
A0042802molecular_functionidentical protein binding
Functional Information from PDB Data
site_idAC1
Number of Residues15
Detailsbinding site for residue DP6 A 501
ChainResidue
AALA19
ATHR217
AMET220
APHE268
AASP310
AHOH608
AHOH624
ATYR23
ALYS26
AARG78
ASER161
AGLY162
ASER163
AARG166
ASER216

site_idAC2
Number of Residues6
Detailsbinding site for residue SO4 A 502
ChainResidue
ASER59
APHE60
AASP61
AARG62
AARG64
AHIS113

site_idAC3
Number of Residues7
Detailsbinding site for residue SO4 A 503
ChainResidue
APHE169
AGLY170
AGLN190
AARG391
AGLY392
AHOH652
AHOH673

site_idAC4
Number of Residues3
Detailsbinding site for residue SO4 A 504
ChainResidue
ALEU396
AGLN397
AASP398

site_idAC5
Number of Residues2
Detailsbinding site for residue SO4 A 505
ChainResidue
ALYS180
AGLU181

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsMotif: {"description":"Peroxisomal targeting signal PTS2","evidences":[{"source":"PubMed","id":"21655959","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues10
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"31268677","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6N10","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

247947

PDB entries from 2026-01-21

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