6MWC

CryoEM structure of chimeric Eastern Equine Encephalitis Virus with Fab of EEEV-5 antibody

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0004252	molecular_function	serine-type endopeptidase activity
A	0019028	cellular_component	viral capsid
A	0055036	cellular_component	virion membrane
B	0005198	molecular_function	structural molecule activity
B	0019028	cellular_component	viral capsid
D	0002250	biological_process	adaptive immune response
D	0002376	biological_process	immune system process
D	0019814	cellular_component	immunoglobulin complex
E	0004252	molecular_function	serine-type endopeptidase activity
E	0019028	cellular_component	viral capsid
E	0055036	cellular_component	virion membrane
F	0005198	molecular_function	structural molecule activity
F	0019028	cellular_component	viral capsid
H	0002250	biological_process	adaptive immune response
H	0002376	biological_process	immune system process
H	0019814	cellular_component	immunoglobulin complex
I	0004252	molecular_function	serine-type endopeptidase activity
I	0019028	cellular_component	viral capsid
I	0055036	cellular_component	virion membrane
J	0005198	molecular_function	structural molecule activity
J	0019028	cellular_component	viral capsid
L	0002250	biological_process	adaptive immune response
L	0002376	biological_process	immune system process
L	0019814	cellular_component	immunoglobulin complex
M	0004252	molecular_function	serine-type endopeptidase activity
M	0019028	cellular_component	viral capsid
M	0055036	cellular_component	virion membrane
N	0005198	molecular_function	structural molecule activity
N	0019028	cellular_component	viral capsid
P	0002250	biological_process	adaptive immune response
P	0002376	biological_process	immune system process
P	0019814	cellular_component	immunoglobulin complex

Functional Information from PROSITE/UniProt

site_id	PS00290
Number of Residues	7
Details	IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YSCQVTH

Chain	Residue	Details
D	TYR694-HIS700

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	1452
Details	TOPO_DOM: Extracellular => ECO:0000255

Chain	Residue	Details
B	ASP488-THR851
F	ASP1488-THR1851
J	ASP2488-THR2851
N	ASP3488-THR3851

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site_id	SWS_FT_FI2
Number of Residues	80
Details	TRANSMEM: Helical => ECO:0000255

Chain	Residue	Details
B	ILE852-LEU872
F	ILE1852-LEU1872
J	ILE2852-LEU2872
N	ILE3852-LEU3872

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site_id	SWS_FT_FI3
Number of Residues	136
Details	TOPO_DOM: Cytoplasmic => ECO:0000255

Chain	Residue	Details
B	LEU873-ALA907
F	LEU1873-ALA1907
J	LEU2873-ALA2907
N	LEU3873-ALA3907

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site_id	SWS_FT_FI4
Number of Residues	4
Details	SITE: Cleavage; by host signal peptidase => ECO:0000250

Chain	Residue	Details
B	ALA907
F	ALA1907
J	ALA2907
N	ALA3907

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site_id	SWS_FT_FI5
Number of Residues	12
Details	LIPID: S-palmitoyl cysteine; by host => ECO:0000250

Chain	Residue	Details
B	CYS880
N	CYS3880
N	CYS3900
N	CYS3901
B	CYS900
B	CYS901
F	CYS1880
F	CYS1900
F	CYS1901
J	CYS2880
J	CYS2900
J	CYS2901

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