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6MPD

Citrobacter freundii tyrosine phenol-lyase complexed with 4-hydroxypyridine and aminoacrylate from 3-F-L-tyrosine

Functional Information from GO Data
ChainGOidnamespacecontents
A0006520biological_processamino acid metabolic process
A0006570biological_processtyrosine metabolic process
A0009072biological_processaromatic amino acid metabolic process
A0016829molecular_functionlyase activity
A0016830molecular_functioncarbon-carbon lyase activity
A0050371molecular_functiontyrosine phenol-lyase activity
B0006520biological_processamino acid metabolic process
B0006570biological_processtyrosine metabolic process
B0009072biological_processaromatic amino acid metabolic process
B0016829molecular_functionlyase activity
B0016830molecular_functioncarbon-carbon lyase activity
B0050371molecular_functiontyrosine phenol-lyase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue K A 1001
ChainResidue
AGLY52
AASN262
AHOH1214
AHOH1224
BGLU69
BHOH1857

site_idAC2
Number of Residues2
Detailsbinding site for residue CQG A 1002
ChainResidue
AGLN228
AARG323

site_idAC3
Number of Residues8
Detailsbinding site for residue CQG A 1003
ChainResidue
APHE123
ATHR124
AARG381
APHE448
APHE449
A0JO1004
BTYR71
AARG100

site_idAC4
Number of Residues16
Detailsbinding site for residue 0JO A 1004
ChainResidue
ATHR49
ASER51
AGLN98
AGLY99
AARG100
AGLU103
APHE123
AASN185
AASP214
AARG217
ASER254
ALYS257
AMET379
AARG404
ACQG1003
AHOH1119

site_idAC5
Number of Residues5
Detailsbinding site for residue K A 1005
ChainResidue
AGLU69
AHOH1209
BGLY52
BASN262
BHOH1802

site_idAC6
Number of Residues8
Detailsbinding site for residue CQG A 1006
ChainResidue
AASP68
AGLU75
BGLU14
BTHR15
BSER40
BLYS41
BHOH1821
BHOH1988

site_idAC7
Number of Residues7
Detailsbinding site for residue P33 B 1601
ChainResidue
ATYR3
ATYR324
AALA415
BTYR3
BTYR324
BALA415
BASP418

site_idAC8
Number of Residues10
Detailsbinding site for residue YOF B 1602
ChainResidue
ATYR71
AMET288
BTHR49
BARG100
BPHE123
BASN185
BARG217
BLLP257
BARG404
BHOH1949

Functional Information from PROSITE/UniProt
site_idPS00853
Number of Residues19
DetailsBETA_ELIM_LYASE Beta-eliminating lyases pyridoxal-phosphate attachment site. YaDgctMSGKKDcLVnIGG
ChainResidueDetails
ATYR247-GLY265
BTYR247-GLY265

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine
ChainResidueDetails
BLLP257

Catalytic Information from CSA
site_idMCSA1
Number of Residues7
DetailsM-CSA 933
ChainResidueDetails
BTYR71proton acceptor, proton donor
BPHE123steric role
BTHR124electrostatic stabiliser
BASP214electrostatic stabiliser
BLLP257covalently attached, electron pair acceptor, electron pair donor, nucleofuge, nucleophile, proton acceptor, proton donor
BARG381electrostatic stabiliser
BPHE448electrostatic stabiliser, ground state destabiliser

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PDB entries from 2024-06-26

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