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6MB1

Crystal structure of N-myristoyl transferase (NMT) from Plasmodium vivax in complex with inhibitor IMP-1002

Functional Information from GO Data
ChainGOidnamespacecontents
A0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
A0006499biological_processN-terminal protein myristoylation
A0016746molecular_functionacyltransferase activity
B0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
B0006499biological_processN-terminal protein myristoylation
B0016746molecular_functionacyltransferase activity
C0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
C0006499biological_processN-terminal protein myristoylation
C0016746molecular_functionacyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues37
Detailsbinding site for residue YNC A 501
ChainResidue
ATYR28
ALEU163
ACYS164
AVAL165
AARG170
ASER171
ALYS172
AARG173
ALEU174
AALA175
APRO176
ALYS29
ATHR183
ATRP192
AGLN193
AALA194
ATHR197
ALEU202
ATYR393
AHOH633
AHOH642
AHOH661
APHE30
AHOH688
AHOH848
AHOH860
AHOH876
AHOH900
AHOH936
AHOH983
AHOH1009
ATRP31
AASN94
ATYR95
AVAL96
AASN161
APHE162

site_idAC2
Number of Residues16
Detailsbinding site for residue JCY A 502
ChainResidue
AVAL96
APHE103
APHE105
ATYR107
AASN161
ATHR197
AGLY199
ATYR211
ASER319
ATYR334
AASN365
AALA366
ALEU367
ALEU409
ALEU410
AHOH649

site_idAC3
Number of Residues5
Detailsbinding site for residue CL A 503
ChainResidue
ALYS180
ATHR247
ALEU248
AARG358
AHOH704

site_idAC4
Number of Residues6
Detailsbinding site for residue EDO A 504
ChainResidue
AGLU45
AASN276
AHIS404
AHOH606
AHOH611
BGLN371

site_idAC5
Number of Residues5
Detailsbinding site for residue EDO A 505
ChainResidue
AGLU97
ALYS167
AARG170
AHOH683
AHOH786

site_idAC6
Number of Residues6
Detailsbinding site for residue SO4 A 506
ChainResidue
AARG210
ALYS373
AHOH693
AHOH746
BARG210
BLYS373

site_idAC7
Number of Residues37
Detailsbinding site for residue YNC B 501
ChainResidue
BLEU202
BTYR393
BHOH621
BHOH642
BHOH699
BHOH744
BHOH832
BHOH834
BHOH835
BHOH846
BHOH858
BHOH887
BHOH991
BTYR28
BLYS29
BPHE30
BTRP31
BTYR95
BVAL96
BASN161
BPHE162
BLEU163
BCYS164
BVAL165
BARG170
BSER171
BLYS172
BARG173
BLEU174
BALA175
BPRO176
BTHR183
BTRP192
BGLN193
BALA194
BTYR196
BTHR197

site_idAC8
Number of Residues14
Detailsbinding site for residue JCY B 502
ChainResidue
BVAL96
BPHE105
BTYR107
BASN161
BTHR197
BGLY199
BTYR211
BSER319
BTYR334
BASN365
BALA366
BLEU367
BLEU409
BLEU410

site_idAC9
Number of Residues5
Detailsbinding site for residue CL B 503
ChainResidue
BLYS180
BTHR247
BLEU248
BARG358
BHOH698

site_idAD1
Number of Residues5
Detailsbinding site for residue EDO B 504
ChainResidue
BTYR65
BLYS180
BHOH739
BHOH765
BHOH823

site_idAD2
Number of Residues4
Detailsbinding site for residue EDO B 505
ChainResidue
BLYS167
BARG170
BHOH719
BHOH855

site_idAD3
Number of Residues6
Detailsbinding site for residue EDO B 506
ChainResidue
AGLN371
BGLU45
BASN276
BHIS404
BHOH608
BHOH636

site_idAD4
Number of Residues36
Detailsbinding site for residue YNC C 501
ChainResidue
CTYR28
CLYS29
CPHE30
CTRP31
CTYR95
CVAL96
CASN161
CPHE162
CLEU163
CCYS164
CVAL165
CARG170
CSER171
CLYS172
CARG173
CLEU174
CALA175
CPRO176
CTHR183
CTRP192
CGLN193
CTYR196
CTHR197
CLEU202
CTYR393
CHOH639
CHOH647
CHOH652
CHOH673
CHOH691
CHOH792
CHOH817
CHOH828
CHOH832
CHOH886
CHOH980

site_idAD5
Number of Residues16
Detailsbinding site for residue JCY C 502
ChainResidue
CVAL96
CPHE103
CPHE105
CTYR107
CASN161
CTHR197
CGLY199
CTYR211
CSER319
CTYR334
CASN365
CALA366
CLEU367
CLEU388
CLEU409
CLEU410

site_idAD6
Number of Residues5
Detailsbinding site for residue CL C 503
ChainResidue
CLYS180
CTHR247
CLEU248
CARG358
CHOH689

site_idAD7
Number of Residues6
Detailsbinding site for residue EDO C 504
ChainResidue
CTYR65
CLYS180
CTHR183
CHOH750
CHOH780
CHOH793

site_idAD8
Number of Residues4
Detailsbinding site for residue EDO C 505
ChainResidue
CGLU159
CTYR337
CVAL408
CHOH614

site_idAD9
Number of Residues5
Detailsbinding site for residue EDO C 506
ChainResidue
CGLU97
CLYS167
CARG170
CHOH680
CHOH727

Functional Information from PROSITE/UniProt
site_idPS00975
Number of Residues9
DetailsNMT_1 Myristoyl-CoA:protein N-myristoyltransferase signature 1. EVNFLCvHK
ChainResidueDetails
AGLU159-LYS167

site_idPS00976
Number of Residues7
DetailsNMT_2 Myristoyl-CoA:protein N-myristoyltransferase signature 2. KFGeGDG
ChainResidueDetails
ALYS380-GLY386

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PDB entries from 2024-07-24

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