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6MAZ

Crystal structure of N-myristoyl transferase (NMT) G386E mutant from Plasmodium vivax in complex with inhibitor IMP-0366

Functional Information from GO Data
ChainGOidnamespacecontents
A0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
A0006499biological_processN-terminal protein myristoylation
A0016746molecular_functionacyltransferase activity
B0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
B0006499biological_processN-terminal protein myristoylation
B0016746molecular_functionacyltransferase activity
C0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
C0006499biological_processN-terminal protein myristoylation
C0016746molecular_functionacyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues39
Detailsbinding site for residue YNC A 501
ChainResidue
ATYR28
ACYS164
AVAL165
AARG170
ASER171
ALYS172
AARG173
ALEU174
AALA175
APRO176
ATHR183
ALYS29
AILE186
ATRP192
AGLN193
AALA194
ATYR196
ATHR197
ALEU202
ATYR393
A646503
AHOH634
APHE30
AHOH660
AHOH675
AHOH724
AHOH735
AHOH843
AHOH862
AHOH901
AHOH902
AHOH939
AHOH1024
ATRP31
AASN94
ATYR95
AVAL96
APHE162
ALEU163

site_idAC2
Number of Residues5
Detailsbinding site for residue CL A 502
ChainResidue
ALYS180
ATHR247
ALEU248
AARG358
AHOH665

site_idAC3
Number of Residues22
Detailsbinding site for residue 646 A 503
ChainResidue
AVAL96
AGLU97
AASP98
APHE103
APHE105
AASN161
ATHR197
AGLY199
ATYR211
AHIS213
APHE226
ASER319
ATYR334
AGLU386
ALEU410
AYNC501
AEDO504
AHOH609
AHOH628
AHOH629
AHOH696
AHOH1027

site_idAC4
Number of Residues8
Detailsbinding site for residue EDO A 504
ChainResidue
ATYR211
ATYR315
ALEU317
ATYR334
ALEU409
ALEU410
A646503
AHOH652

site_idAC5
Number of Residues23
Detailsbinding site for residue 646 B 501
ChainResidue
BVAL96
BGLU97
BASP98
BPHE103
BARG104
BPHE105
BASN161
BTHR197
BGLY199
BTYR211
BHIS213
BPHE226
BSER319
BTYR334
BGLU386
BLEU410
BYNC502
BEDO504
BHOH602
BHOH667
BHOH870
BHOH888
BHOH917

site_idAC6
Number of Residues39
Detailsbinding site for residue YNC B 502
ChainResidue
BPHE30
BTRP31
BASN94
BTYR95
BVAL96
BPHE162
BLEU163
BCYS164
BVAL165
BARG170
BSER171
BLYS172
BARG173
BLEU174
BALA175
BPRO176
BTHR183
BTRP192
BGLN193
BALA194
BTYR196
BTHR197
BLEU202
BTYR393
B646501
BHOH664
BHOH681
BHOH692
BHOH700
BHOH785
BHOH798
BHOH840
BHOH878
BHOH897
BHOH906
BHOH976
BHOH988
BTYR28
BLYS29

site_idAC7
Number of Residues5
Detailsbinding site for residue CL B 503
ChainResidue
BLYS180
BTHR247
BLEU248
BARG358
BHOH719

site_idAC8
Number of Residues7
Detailsbinding site for residue EDO B 504
ChainResidue
BTYR211
BTYR315
BLEU317
BTYR334
BLEU410
B646501
BHOH644

site_idAC9
Number of Residues8
Detailsbinding site for residue EDO B 505
ChainResidue
AMET370
AGLN371
AHOH625
BHIS404
BHOH613
BHOH707
BHOH925
BHOH1067

site_idAD1
Number of Residues4
Detailsbinding site for residue SO4 B 506
ChainResidue
AARG210
AHOH611
BARG210
BLYS373

site_idAD2
Number of Residues39
Detailsbinding site for residue YNC C 501
ChainResidue
CTYR28
CLYS29
CPHE30
CTRP31
CASN94
CTYR95
CVAL96
CPHE162
CLEU163
CCYS164
CVAL165
CARG170
CSER171
CLYS172
CARG173
CLEU174
CALA175
CPRO176
CTHR183
CILE186
CASN187
CTRP192
CALA194
CTYR196
CTHR197
CLEU202
CTYR393
C646502
CHOH636
CHOH665
CHOH670
CHOH736
CHOH757
CHOH803
CHOH824
CHOH828
CHOH847
CHOH858
CHOH930

site_idAD3
Number of Residues23
Detailsbinding site for residue 646 C 502
ChainResidue
CVAL96
CGLU97
CASP98
CPHE103
CARG104
CPHE105
CASN161
CTHR197
CGLY199
CTYR211
CHIS213
CPHE226
CSER319
CTYR334
CGLU386
CLEU410
CYNC501
CEDO504
CHOH603
CHOH608
CHOH681
CHOH695
CHOH705

site_idAD4
Number of Residues5
Detailsbinding site for residue CL C 503
ChainResidue
CLYS180
CTHR247
CLEU248
CARG358
CHOH664

site_idAD5
Number of Residues7
Detailsbinding site for residue EDO C 504
ChainResidue
CTYR211
CTYR315
CLEU317
CTYR334
CLEU410
C646502
CHOH642

site_idAD6
Number of Residues7
Detailsbinding site for residue SO4 C 505
ChainResidue
CASN135
CLYS220
CTYR327
CHOH612
CHOH657
CHOH768
CHOH851

Functional Information from PROSITE/UniProt
site_idPS00975
Number of Residues9
DetailsNMT_1 Myristoyl-CoA:protein N-myristoyltransferase signature 1. EVNFLCvHK
ChainResidueDetails
AGLU159-LYS167

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PDB entries from 2024-07-24

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