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6M6A

Cryo-EM structure of Thermus thermophilus Mfd in complex with RNA polymerase

Functional Information from GO Data
ChainGOidnamespacecontents
A0000428cellular_componentDNA-directed RNA polymerase complex
A0003677molecular_functionDNA binding
A0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0006351biological_processDNA-templated transcription
A0016779molecular_functionnucleotidyltransferase activity
A0034062molecular_function5'-3' RNA polymerase activity
A0046983molecular_functionprotein dimerization activity
B0000428cellular_componentDNA-directed RNA polymerase complex
B0003677molecular_functionDNA binding
B0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0006351biological_processDNA-templated transcription
B0016779molecular_functionnucleotidyltransferase activity
B0034062molecular_function5'-3' RNA polymerase activity
B0046983molecular_functionprotein dimerization activity
C0000428cellular_componentDNA-directed RNA polymerase complex
C0003677molecular_functionDNA binding
C0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
C0006351biological_processDNA-templated transcription
C0016779molecular_functionnucleotidyltransferase activity
C0032549molecular_functionribonucleoside binding
C0034062molecular_function5'-3' RNA polymerase activity
D0000287molecular_functionmagnesium ion binding
D0000428cellular_componentDNA-directed RNA polymerase complex
D0003677molecular_functionDNA binding
D0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
D0005515molecular_functionprotein binding
D0006351biological_processDNA-templated transcription
D0008270molecular_functionzinc ion binding
D0016779molecular_functionnucleotidyltransferase activity
D0034062molecular_function5'-3' RNA polymerase activity
D0046872molecular_functionmetal ion binding
E0000428cellular_componentDNA-directed RNA polymerase complex
E0003677molecular_functionDNA binding
E0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
E0006351biological_processDNA-templated transcription
E0016779molecular_functionnucleotidyltransferase activity
E0034062molecular_function5'-3' RNA polymerase activity
M0000716biological_processtranscription-coupled nucleotide-excision repair, DNA damage recognition
M0003676molecular_functionnucleic acid binding
M0003677molecular_functionDNA binding
M0003678molecular_functionDNA helicase activity
M0003684molecular_functiondamaged DNA binding
M0004386molecular_functionhelicase activity
M0005524molecular_functionATP binding
M0005737cellular_componentcytoplasm
M0006281biological_processDNA repair
M0006355biological_processregulation of DNA-templated transcription
M0016787molecular_functionhydrolase activity
M0032508biological_processDNA duplex unwinding
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue ZN D 2001
ChainResidue
DCYS1112
DARG1189
DCYS1194
DCYS1201
DCYS1204

site_idAC2
Number of Residues6
Detailsbinding site for residue ZN D 2002
ChainResidue
DPHE45
DASP46
DTHR31
DGLU40
DGLY43
DLEU44

site_idAC3
Number of Residues3
Detailsbinding site for residue MG D 2003
ChainResidue
DASP739
DASP741
DASP743

Functional Information from PROSITE/UniProt
site_idPS01166
Number of Residues13
DetailsRNA_POL_BETA RNA polymerases beta chain signature. GdKLANrHGNKGV
ChainResidueDetails
CGLY836-VAL848

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues11
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01322
ChainResidueDetails
DCYS58
DCYS1201
DCYS1204
DCYS60
DCYS73
DCYS76
DASP739
DASP741
DASP743
DCYS1112
DCYS1194

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PDB entries from 2024-08-14

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