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6M61

Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) with inhibitor heptelidic acid

Functional Information from GO Data
ChainGOidnamespacecontents
O0000226biological_processmicrotubule cytoskeleton organization
O0001819biological_processpositive regulation of cytokine production
O0004365molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
O0005515molecular_functionprotein binding
O0005634cellular_componentnucleus
O0005737cellular_componentcytoplasm
O0005811cellular_componentlipid droplet
O0005829cellular_componentcytosol
O0005856cellular_componentcytoskeleton
O0005886cellular_componentplasma membrane
O0006006biological_processglucose metabolic process
O0006096biological_processglycolytic process
O0006417biological_processregulation of translation
O0006915biological_processapoptotic process
O0008017molecular_functionmicrotubule binding
O0010951biological_processnegative regulation of endopeptidase activity
O0015630cellular_componentmicrotubule cytoskeleton
O0016020cellular_componentmembrane
O0016241biological_processregulation of macroautophagy
O0016491molecular_functionoxidoreductase activity
O0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
O0016740molecular_functiontransferase activity
O0017148biological_processnegative regulation of translation
O0019828molecular_functionaspartic-type endopeptidase inhibitor activity
O0031640biological_processkilling of cells of another organism
O0031965cellular_componentnuclear membrane
O0031982cellular_componentvesicle
O0032481biological_processpositive regulation of type I interferon production
O0035605molecular_functionpeptidyl-cysteine S-nitrosylase activity
O0035606biological_processpeptidyl-cysteine S-trans-nitrosylation
O0042802molecular_functionidentical protein binding
O0043123biological_processpositive regulation of canonical NF-kappaB signal transduction
O0043231cellular_componentintracellular membrane-bounded organelle
O0045087biological_processinnate immune response
O0048471cellular_componentperinuclear region of cytoplasm
O0050661molecular_functionNADP binding
O0050821biological_processprotein stabilization
O0050832biological_processdefense response to fungus
O0051287molecular_functionNAD binding
O0051402biological_processneuron apoptotic process
O0051873biological_processkilling by host of symbiont cells
O0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
O0070062cellular_componentextracellular exosome
O0071346biological_processcellular response to type II interferon
O0097452cellular_componentGAIT complex
O0097718molecular_functiondisordered domain specific binding
O1990904cellular_componentribonucleoprotein complex
P0000226biological_processmicrotubule cytoskeleton organization
P0001819biological_processpositive regulation of cytokine production
P0004365molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
P0005515molecular_functionprotein binding
P0005634cellular_componentnucleus
P0005737cellular_componentcytoplasm
P0005811cellular_componentlipid droplet
P0005829cellular_componentcytosol
P0005856cellular_componentcytoskeleton
P0005886cellular_componentplasma membrane
P0006006biological_processglucose metabolic process
P0006096biological_processglycolytic process
P0006417biological_processregulation of translation
P0006915biological_processapoptotic process
P0008017molecular_functionmicrotubule binding
P0010951biological_processnegative regulation of endopeptidase activity
P0015630cellular_componentmicrotubule cytoskeleton
P0016020cellular_componentmembrane
P0016241biological_processregulation of macroautophagy
P0016491molecular_functionoxidoreductase activity
P0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
P0016740molecular_functiontransferase activity
P0017148biological_processnegative regulation of translation
P0019828molecular_functionaspartic-type endopeptidase inhibitor activity
P0031640biological_processkilling of cells of another organism
P0031965cellular_componentnuclear membrane
P0031982cellular_componentvesicle
P0032481biological_processpositive regulation of type I interferon production
P0035605molecular_functionpeptidyl-cysteine S-nitrosylase activity
P0035606biological_processpeptidyl-cysteine S-trans-nitrosylation
P0042802molecular_functionidentical protein binding
P0043123biological_processpositive regulation of canonical NF-kappaB signal transduction
P0043231cellular_componentintracellular membrane-bounded organelle
P0045087biological_processinnate immune response
P0048471cellular_componentperinuclear region of cytoplasm
P0050661molecular_functionNADP binding
P0050821biological_processprotein stabilization
P0050832biological_processdefense response to fungus
P0051287molecular_functionNAD binding
P0051402biological_processneuron apoptotic process
P0051873biological_processkilling by host of symbiont cells
P0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
P0070062cellular_componentextracellular exosome
P0071346biological_processcellular response to type II interferon
P0097452cellular_componentGAIT complex
P0097718molecular_functiondisordered domain specific binding
P1990904cellular_componentribonucleoprotein complex
Q0000226biological_processmicrotubule cytoskeleton organization
Q0001819biological_processpositive regulation of cytokine production
Q0004365molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
Q0005515molecular_functionprotein binding
Q0005634cellular_componentnucleus
Q0005737cellular_componentcytoplasm
Q0005811cellular_componentlipid droplet
Q0005829cellular_componentcytosol
Q0005856cellular_componentcytoskeleton
Q0005886cellular_componentplasma membrane
Q0006006biological_processglucose metabolic process
Q0006096biological_processglycolytic process
Q0006417biological_processregulation of translation
Q0006915biological_processapoptotic process
Q0008017molecular_functionmicrotubule binding
Q0010951biological_processnegative regulation of endopeptidase activity
Q0015630cellular_componentmicrotubule cytoskeleton
Q0016020cellular_componentmembrane
Q0016241biological_processregulation of macroautophagy
Q0016491molecular_functionoxidoreductase activity
Q0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
Q0016740molecular_functiontransferase activity
Q0017148biological_processnegative regulation of translation
Q0019828molecular_functionaspartic-type endopeptidase inhibitor activity
Q0031640biological_processkilling of cells of another organism
Q0031965cellular_componentnuclear membrane
Q0031982cellular_componentvesicle
Q0032481biological_processpositive regulation of type I interferon production
Q0035605molecular_functionpeptidyl-cysteine S-nitrosylase activity
Q0035606biological_processpeptidyl-cysteine S-trans-nitrosylation
Q0042802molecular_functionidentical protein binding
Q0043123biological_processpositive regulation of canonical NF-kappaB signal transduction
Q0043231cellular_componentintracellular membrane-bounded organelle
Q0045087biological_processinnate immune response
Q0048471cellular_componentperinuclear region of cytoplasm
Q0050661molecular_functionNADP binding
Q0050821biological_processprotein stabilization
Q0050832biological_processdefense response to fungus
Q0051287molecular_functionNAD binding
Q0051402biological_processneuron apoptotic process
Q0051873biological_processkilling by host of symbiont cells
Q0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
Q0070062cellular_componentextracellular exosome
Q0071346biological_processcellular response to type II interferon
Q0097452cellular_componentGAIT complex
Q0097718molecular_functiondisordered domain specific binding
Q1990904cellular_componentribonucleoprotein complex
R0000226biological_processmicrotubule cytoskeleton organization
R0001819biological_processpositive regulation of cytokine production
R0004365molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
R0005515molecular_functionprotein binding
R0005634cellular_componentnucleus
R0005737cellular_componentcytoplasm
R0005811cellular_componentlipid droplet
R0005829cellular_componentcytosol
R0005856cellular_componentcytoskeleton
R0005886cellular_componentplasma membrane
R0006006biological_processglucose metabolic process
R0006096biological_processglycolytic process
R0006417biological_processregulation of translation
R0006915biological_processapoptotic process
R0008017molecular_functionmicrotubule binding
R0010951biological_processnegative regulation of endopeptidase activity
R0015630cellular_componentmicrotubule cytoskeleton
R0016020cellular_componentmembrane
R0016241biological_processregulation of macroautophagy
R0016491molecular_functionoxidoreductase activity
R0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
R0016740molecular_functiontransferase activity
R0017148biological_processnegative regulation of translation
R0019828molecular_functionaspartic-type endopeptidase inhibitor activity
R0031640biological_processkilling of cells of another organism
R0031965cellular_componentnuclear membrane
R0031982cellular_componentvesicle
R0032481biological_processpositive regulation of type I interferon production
R0035605molecular_functionpeptidyl-cysteine S-nitrosylase activity
R0035606biological_processpeptidyl-cysteine S-trans-nitrosylation
R0042802molecular_functionidentical protein binding
R0043123biological_processpositive regulation of canonical NF-kappaB signal transduction
R0043231cellular_componentintracellular membrane-bounded organelle
R0045087biological_processinnate immune response
R0048471cellular_componentperinuclear region of cytoplasm
R0050661molecular_functionNADP binding
R0050821biological_processprotein stabilization
R0050832biological_processdefense response to fungus
R0051287molecular_functionNAD binding
R0051402biological_processneuron apoptotic process
R0051873biological_processkilling by host of symbiont cells
R0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
R0070062cellular_componentextracellular exosome
R0071346biological_processcellular response to type II interferon
R0097452cellular_componentGAIT complex
R0097718molecular_functiondisordered domain specific binding
R1990904cellular_componentribonucleoprotein complex
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue EDO O 401
ChainResidue
OLYS162
OVAL163
OASP166
OASN167
OHOH543
OHOH608

site_idAC2
Number of Residues4
Detailsbinding site for residue EDO O 402
ChainResidue
OHOH655
OASP39
OLEU40
OASN41

site_idAC3
Number of Residues4
Detailsbinding site for residue PEG O 403
ChainResidue
OPRO129
OMET130
OPHE131
OHOH582

site_idAC4
Number of Residues3
Detailsbinding site for residue ZN O 404
ChainResidue
OHIS57
OHOH559
OHOH783

site_idAC5
Number of Residues4
Detailsbinding site for residue ZN O 405
ChainResidue
OASP289
OHIS291
OHOH598
OHOH741

site_idAC6
Number of Residues13
Detailsbinding site for residue F4F O 406
ChainResidue
OPRO124
OSER151
OCYS152
OTHR153
OHIS179
OTHR211
OGLY212
OARG234
ONAD407
OHOH508
OHOH509
OHOH535
OHOH563

site_idAC7
Number of Residues33
Detailsbinding site for residue NAD O 407
ChainResidue
OASN9
OGLY10
OPHE11
OGLY12
OARG13
OILE14
OASN34
OASP35
OPRO36
OPHE37
OARG80
OSER98
OTHR99
OGLY100
OSER122
OALA123
OCYS152
OALA183
OASN316
OTYR320
OF4F406
OHOH530
OHOH538
OHOH558
OHOH569
OHOH591
OHOH595
OHOH597
OHOH599
OHOH616
OHOH657
OHOH664
OHOH674

site_idAC8
Number of Residues3
Detailsbinding site for residue EDO Q 401
ChainResidue
QPRO129
QMET130
QASN136

site_idAC9
Number of Residues5
Detailsbinding site for residue EDO Q 402
ChainResidue
OHOH770
QGLY88
QASP89
QGLY115
QHOH668

site_idAD1
Number of Residues5
Detailsbinding site for residue EDO Q 403
ChainResidue
QASP39
QLEU40
QILE76
QGLN78
QHOH643

site_idAD2
Number of Residues6
Detailsbinding site for residue EDO Q 404
ChainResidue
OTYR49
QTHR277
QHIS279
QHOH588
QHOH607
QHOH628

site_idAD3
Number of Residues4
Detailsbinding site for residue EDO Q 405
ChainResidue
PGLU106
QPRO252
QLYS254
QASP305

site_idAD4
Number of Residues5
Detailsbinding site for residue ZN Q 406
ChainResidue
QASP289
QHIS291
QHOH588
QHOH651
QHOH735

site_idAD5
Number of Residues30
Detailsbinding site for residue NAD Q 408
ChainResidue
QARG13
QILE14
QASN34
QASP35
QPRO36
QPHE37
QARG80
QSER98
QTHR99
QGLY100
QSER122
QALA123
QCYS152
QALA183
QASN316
QTYR320
QF4F407
QHOH509
QHOH525
QHOH558
QHOH567
QHOH584
QHOH659
QHOH677
QHOH696
QHOH702
QASN9
QGLY10
QPHE11
QGLY12

site_idAD6
Number of Residues4
Detailsbinding site for residue EDO P 401
ChainResidue
PTHR277
PHIS279
PPHE286
PHOH586

site_idAD7
Number of Residues5
Detailsbinding site for residue EDO P 402
ChainResidue
PARG20
PASN24
PPHE56
PHIS57
PPHE318

site_idAD8
Number of Residues3
Detailsbinding site for residue EDO P 403
ChainResidue
PLYS254
PASN304
PASP305

site_idAD9
Number of Residues6
Detailsbinding site for residue ZN P 404
ChainResidue
OHIS330
OHOH528
OHOH549
PGLU335
PHOH624
PHOH666

site_idAE1
Number of Residues5
Detailsbinding site for residue ZN P 405
ChainResidue
PASP289
PHIS291
PHOH586
PHOH664
PHOH721

site_idAE2
Number of Residues5
Detailsbinding site for residue EDO R 401
ChainResidue
RGLY300
RILE301
RALA302
RHOH502
RHOH605

site_idAE3
Number of Residues5
Detailsbinding site for residue GOL R 402
ChainResidue
RGLY193
RLYS194
RTRP196
RHOH535
RHOH606

site_idAE4
Number of Residues17
Detailsbinding site for Di-peptide F4F Q 407 and CYS Q 152
ChainResidue
QPRO124
QSER151
QTHR153
QTHR154
QASN155
QCYS156
QTHR177
QHIS179
QTHR211
QGLY212
QALA213
QARG234
QTYR314
QTYR320
QNAD408
QHOH530
QHOH623

Functional Information from PROSITE/UniProt
site_idPS00071
Number of Residues8
DetailsGAPDH Glyceraldehyde 3-phosphate dehydrogenase active site. ASCTTNcL
ChainResidueDetails
OALA150-LEU157

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Nucleophile => ECO:0000269|PubMed:25086035
ChainResidueDetails
OCYS152
QCYS152
PCYS152
RCYS152

site_idSWS_FT_FI2
Number of Residues20
DetailsBINDING: BINDING => ECO:0000269|PubMed:16239728, ECO:0000269|PubMed:16510976
ChainResidueDetails
OASN316
QARG13
QASP35
QARG80
QSER122
QASN316
PARG13
PASP35
PARG80
PSER122
PASN316
RARG13
RASP35
RARG80
RSER122
RASN316
OARG13
OASP35
OARG80
OSER122

site_idSWS_FT_FI3
Number of Residues16
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P22513
ChainResidueDetails
RSER151
RTHR182
RTHR211
RARG234
OSER151
OTHR182
OTHR211
OARG234
QSER151
QTHR182
QTHR211
QARG234
PSER151
PTHR182
PTHR211
PARG234

site_idSWS_FT_FI4
Number of Residues4
DetailsSITE: Activates thiol group during catalysis => ECO:0000305|PubMed:16239728, ECO:0000305|PubMed:16510976
ChainResidueDetails
OHIS179
QHIS179
PHIS179
RHIS179

site_idSWS_FT_FI5
Number of Residues20
DetailsMOD_RES: N6,N6-dimethyllysine => ECO:0000269|PubMed:18183946
ChainResidueDetails
QLYS263
QLYS334
PLYS5
PLYS66
PLYS260
PLYS263
PLYS334
RLYS5
RLYS66
RLYS260
RLYS263
RLYS334
OLYS5
OLYS66
OLYS260
OLYS263
OLYS334
QLYS5
QLYS66
QLYS260

site_idSWS_FT_FI6
Number of Residues28
DetailsMOD_RES: Deamidated asparagine => ECO:0000269|PubMed:18183946
ChainResidueDetails
OASN155
OASN225
OASN316
QASN9
QASN64
QASN70
QASN149
QASN155
QASN225
QASN316
PASN9
PASN64
PASN70
PASN149
PASN155
PASN225
PASN316
RASN9
RASN64
RASN70
RASN149
RASN155
RASN225
RASN316
OASN9
OASN64
OASN70
OASN149

site_idSWS_FT_FI7
Number of Residues4
DetailsMOD_RES: Phosphotyrosine => ECO:0007744|PubMed:15592455
ChainResidueDetails
OTYR42
QTYR42
PTYR42
RTYR42

site_idSWS_FT_FI8
Number of Residues4
DetailsMOD_RES: Methionine sulfoxide; in vitro => ECO:0000305|PubMed:25086035
ChainResidueDetails
OMET46
QMET46
PMET46
RMET46

site_idSWS_FT_FI9
Number of Residues12
DetailsMOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861
ChainResidueDetails
QLYS219
QLYS254
PLYS61
PLYS219
PLYS254
RLYS61
RLYS219
RLYS254
OLYS61
OLYS219
OLYS254
QLYS61

site_idSWS_FT_FI10
Number of Residues4
DetailsMOD_RES: Phosphothreonine => ECO:0000269|PubMed:18183946, ECO:0007744|PubMed:20068231
ChainResidueDetails
OTHR75
QTHR75
PTHR75
RTHR75

site_idSWS_FT_FI11
Number of Residues4
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:17081983, ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163
ChainResidueDetails
OSER83
QSER83
PSER83
RSER83

site_idSWS_FT_FI12
Number of Residues8
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:18183946
ChainResidueDetails
PSER122
PSER148
RSER122
RSER148
OSER148
QSER122
QSER148
OSER122

site_idSWS_FT_FI13
Number of Residues4
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:23186163
ChainResidueDetails
QSER151
PSER151
RSER151
OSER151

site_idSWS_FT_FI14
Number of Residues4
DetailsMOD_RES: S-nitrosocysteine; in reversibly inhibited form => ECO:0000250|UniProtKB:P04797
ChainResidueDetails
OCYS152
PCYS152
QCYS152
RCYS152

site_idSWS_FT_FI15
Number of Residues4
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:23186163
ChainResidueDetails
OTHR153
QTHR153
PTHR153
RTHR153

site_idSWS_FT_FI16
Number of Residues8
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:24275569
ChainResidueDetails
PTHR177
PTHR182
RTHR177
RTHR182
OTHR177
OTHR182
QTHR177
QTHR182

site_idSWS_FT_FI17
Number of Residues4
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:24275569
ChainResidueDetails
OTHR184
QTHR184
PTHR184
RTHR184

site_idSWS_FT_FI18
Number of Residues8
DetailsMOD_RES: N6-malonyllysine; alternate => ECO:0000269|PubMed:21908771
ChainResidueDetails
QLYS194
QLYS215
PLYS194
PLYS215
OLYS194
OLYS215
RLYS194
RLYS215

site_idSWS_FT_FI19
Number of Residues4
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:19690332
ChainResidueDetails
QTHR211
PTHR211
RTHR211
OTHR211

site_idSWS_FT_FI20
Number of Residues4
DetailsMOD_RES: N6-acetyllysine; alternate => ECO:0007744|PubMed:19608861
ChainResidueDetails
OLYS227
QLYS227
PLYS227
RLYS227

site_idSWS_FT_FI21
Number of Residues4
DetailsMOD_RES: Phosphothreonine => ECO:0000269|PubMed:18183946, ECO:0007744|PubMed:23186163
ChainResidueDetails
OTHR229
QTHR229
PTHR229
RTHR229

site_idSWS_FT_FI22
Number of Residues4
DetailsMOD_RES: Phosphothreonine => ECO:0000269|PubMed:18183946
ChainResidueDetails
OTHR237
QTHR237
PTHR237
RTHR237

site_idSWS_FT_FI23
Number of Residues4
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:24275569
ChainResidueDetails
OSER241
QSER241
PSER241
RSER241

site_idSWS_FT_FI24
Number of Residues4
DetailsMOD_RES: S-nitrosocysteine => ECO:0000269|PubMed:22771119, ECO:0000269|PubMed:25417112
ChainResidueDetails
OCYS247
QCYS247
PCYS247
RCYS247

site_idSWS_FT_FI25
Number of Residues4
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:18183946, ECO:0007744|PubMed:19690332
ChainResidueDetails
OSER312
QSER312
PSER312
RSER312

site_idSWS_FT_FI26
Number of Residues4
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
OSER333
QSER333
PSER333
RSER333

site_idSWS_FT_FI27
Number of Residues8
DetailsCARBOHYD: (Microbial infection) N-beta-linked (GlcNAc) arginine => ECO:0000269|PubMed:28522607
ChainResidueDetails
PARG197
PARG200
RARG197
RARG200
OARG197
OARG200
QARG197
QARG200

site_idSWS_FT_FI28
Number of Residues8
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
PLYS186
RLYS186
OLYS186
QLYS186

221051

PDB entries from 2024-06-12

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