6M60
Plumbagin in complex with CRM1#-Ran-RanBP1
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000054 | biological_process | ribosomal subunit export from nucleus |
A | 0000055 | biological_process | ribosomal large subunit export from nucleus |
A | 0000056 | biological_process | ribosomal small subunit export from nucleus |
A | 0000070 | biological_process | mitotic sister chromatid segregation |
A | 0000278 | biological_process | mitotic cell cycle |
A | 0000287 | molecular_function | magnesium ion binding |
A | 0000785 | cellular_component | chromatin |
A | 0001673 | cellular_component | male germ cell nucleus |
A | 0002177 | cellular_component | manchette |
A | 0003682 | molecular_function | chromatin binding |
A | 0003723 | molecular_function | RNA binding |
A | 0003924 | molecular_function | GTPase activity |
A | 0003925 | molecular_function | G protein activity |
A | 0005049 | molecular_function | nuclear export signal receptor activity |
A | 0005515 | molecular_function | protein binding |
A | 0005525 | molecular_function | GTP binding |
A | 0005634 | cellular_component | nucleus |
A | 0005635 | cellular_component | nuclear envelope |
A | 0005643 | cellular_component | nuclear pore |
A | 0005654 | cellular_component | nucleoplasm |
A | 0005730 | cellular_component | nucleolus |
A | 0005737 | cellular_component | cytoplasm |
A | 0005814 | cellular_component | centriole |
A | 0005829 | cellular_component | cytosol |
A | 0006259 | biological_process | DNA metabolic process |
A | 0006606 | biological_process | protein import into nucleus |
A | 0006611 | biological_process | protein export from nucleus |
A | 0006913 | biological_process | nucleocytoplasmic transport |
A | 0007052 | biological_process | mitotic spindle organization |
A | 0007286 | biological_process | spermatid development |
A | 0008104 | biological_process | protein localization |
A | 0014070 | biological_process | response to organic cyclic compound |
A | 0015031 | biological_process | protein transport |
A | 0016020 | cellular_component | membrane |
A | 0016032 | biological_process | viral process |
A | 0016787 | molecular_function | hydrolase activity |
A | 0019003 | molecular_function | GDP binding |
A | 0019904 | molecular_function | protein domain specific binding |
A | 0021766 | biological_process | hippocampus development |
A | 0030036 | biological_process | actin cytoskeleton organization |
A | 0030496 | cellular_component | midbody |
A | 0031503 | biological_process | protein-containing complex localization |
A | 0032092 | biological_process | positive regulation of protein binding |
A | 0032991 | cellular_component | protein-containing complex |
A | 0035281 | biological_process | pre-miRNA export from nucleus |
A | 0036126 | cellular_component | sperm flagellum |
A | 0042307 | biological_process | positive regulation of protein import into nucleus |
A | 0042470 | cellular_component | melanosome |
A | 0042565 | cellular_component | RNA nuclear export complex |
A | 0044877 | molecular_function | protein-containing complex binding |
A | 0045296 | molecular_function | cadherin binding |
A | 0045505 | molecular_function | dynein intermediate chain binding |
A | 0046039 | biological_process | GTP metabolic process |
A | 0046872 | molecular_function | metal ion binding |
A | 0046982 | molecular_function | protein heterodimerization activity |
A | 0051301 | biological_process | cell division |
A | 0055037 | cellular_component | recycling endosome |
A | 0061015 | biological_process | snRNA import into nucleus |
A | 0061676 | molecular_function | importin-alpha family protein binding |
A | 0070062 | cellular_component | extracellular exosome |
A | 0070883 | molecular_function | pre-miRNA binding |
A | 0071389 | biological_process | cellular response to mineralocorticoid stimulus |
A | 0090543 | cellular_component | Flemming body |
A | 1902570 | biological_process | protein localization to nucleolus |
B | 0006913 | biological_process | nucleocytoplasmic transport |
B | 0046907 | biological_process | intracellular transport |
C | 0000055 | biological_process | ribosomal large subunit export from nucleus |
C | 0000056 | biological_process | ribosomal small subunit export from nucleus |
C | 0000776 | cellular_component | kinetochore |
C | 0005049 | molecular_function | nuclear export signal receptor activity |
C | 0005515 | molecular_function | protein binding |
C | 0005634 | cellular_component | nucleus |
C | 0005737 | cellular_component | cytoplasm |
C | 0005816 | cellular_component | spindle pole body |
C | 0006406 | biological_process | mRNA export from nucleus |
C | 0006409 | biological_process | tRNA export from nucleus |
C | 0006611 | biological_process | protein export from nucleus |
C | 0006886 | biological_process | intracellular protein transport |
C | 0015031 | biological_process | protein transport |
C | 0017070 | molecular_function | U6 snRNA binding |
C | 0030619 | molecular_function | U1 snRNA binding |
C | 0030620 | molecular_function | U2 snRNA binding |
C | 0030621 | molecular_function | U4 snRNA binding |
C | 0030623 | molecular_function | U5 snRNA binding |
C | 0031267 | molecular_function | small GTPase binding |
C | 0034501 | biological_process | protein localization to kinetochore |
C | 0048471 | cellular_component | perinuclear region of cytoplasm |
C | 0051168 | biological_process | nuclear export |
C | 0051170 | biological_process | import into nucleus |
C | 0061608 | molecular_function | nuclear import signal receptor activity |
C | 0071528 | biological_process | tRNA re-export from nucleus |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | binding site for residue MG A 301 |
Chain | Residue |
A | THR24 |
A | THR42 |
A | GTP305 |
A | HOH404 |
A | HOH409 |
site_id | AC2 |
Number of Residues | 2 |
Details | binding site for residue GOL A 302 |
Chain | Residue |
A | SER153 |
A | HOH429 |
site_id | AC3 |
Number of Residues | 3 |
Details | binding site for residue NO3 A 303 |
Chain | Residue |
C | GOL1108 |
A | ARG140 |
A | HOH416 |
site_id | AC4 |
Number of Residues | 2 |
Details | binding site for residue NO3 A 304 |
Chain | Residue |
A | LEU50 |
A | VAL51 |
site_id | AC5 |
Number of Residues | 27 |
Details | binding site for residue GTP A 305 |
Chain | Residue |
A | GLY19 |
A | GLY20 |
A | THR21 |
A | GLY22 |
A | LYS23 |
A | THR24 |
A | THR25 |
A | PHE35 |
A | GLU36 |
A | LYS37 |
A | TYR39 |
A | ALA41 |
A | THR42 |
A | GLY68 |
A | ASN122 |
A | LYS123 |
A | ASP125 |
A | ILE126 |
A | SER150 |
A | ALA151 |
A | LYS152 |
A | MG301 |
A | HOH404 |
A | HOH409 |
A | HOH412 |
A | HOH467 |
A | HOH473 |
site_id | AC6 |
Number of Residues | 5 |
Details | binding site for residue NO3 A 306 |
Chain | Residue |
A | HIS139 |
A | ARG140 |
A | LEU144 |
C | GLU357 |
C | LEU358 |
site_id | AC7 |
Number of Residues | 5 |
Details | binding site for residue NO3 C 1101 |
Chain | Residue |
A | ILE136 |
A | HIS139 |
A | HOH405 |
C | GLU357 |
C | LYS360 |
site_id | AC8 |
Number of Residues | 1 |
Details | binding site for residue CL C 1102 |
Chain | Residue |
C | HIS609 |
site_id | AC9 |
Number of Residues | 2 |
Details | binding site for residue CL C 1103 |
Chain | Residue |
C | ALA324 |
C | ARG325 |
site_id | AD1 |
Number of Residues | 4 |
Details | binding site for residue DMS C 1105 |
Chain | Residue |
C | TRP48 |
C | LYS78 |
C | LEU81 |
C | LEU82 |
site_id | AD2 |
Number of Residues | 3 |
Details | binding site for residue NO3 C 1106 |
Chain | Residue |
C | SER937 |
C | PHE941 |
C | THR944 |
site_id | AD3 |
Number of Residues | 6 |
Details | binding site for residue GOL C 1107 |
Chain | Residue |
C | ILE353 |
C | GLU355 |
C | ARG356 |
C | PHE359 |
C | ASN434 |
C | VAL436 |
site_id | AD4 |
Number of Residues | 5 |
Details | binding site for residue GOL C 1108 |
Chain | Residue |
A | NO3303 |
C | THR320 |
C | ALA324 |
C | THR361 |
C | TYR365 |
site_id | AD5 |
Number of Residues | 3 |
Details | binding site for residue NO3 C 1109 |
Chain | Residue |
C | SER501 |
C | TRP502 |
C | HOH1417 |
site_id | AD6 |
Number of Residues | 5 |
Details | binding site for residue NO3 C 1110 |
Chain | Residue |
C | PRO672 |
C | ASN701 |
C | ILE702 |
C | THR705 |
C | HOH1509 |
site_id | AD7 |
Number of Residues | 4 |
Details | binding site for residue NO3 C 1111 |
Chain | Residue |
C | ARG77 |
C | LYS1040 |
C | GLU1041 |
C | VAL1042 |
site_id | AD8 |
Number of Residues | 3 |
Details | binding site for residue DMS C 1112 |
Chain | Residue |
C | ASN846 |
C | TRP891 |
C | HOH1216 |
site_id | AD9 |
Number of Residues | 1 |
Details | binding site for residue NO3 C 1113 |
Chain | Residue |
C | ARG1033 |
site_id | AE1 |
Number of Residues | 3 |
Details | binding site for residue DMS C 1114 |
Chain | Residue |
C | THR575 |
C | VAL576 |
C | F2X1117 |
site_id | AE2 |
Number of Residues | 5 |
Details | binding site for residue F2X C 1115 |
Chain | Residue |
C | ILE963 |
C | TYR967 |
C | GLN988 |
C | THR1019 |
C | CYS1022 |
site_id | AE3 |
Number of Residues | 6 |
Details | binding site for residue F2X C 1116 |
Chain | Residue |
C | LEU209 |
C | SER145 |
C | VAL149 |
C | CYS152 |
C | LEU196 |
C | VAL200 |
site_id | AE4 |
Number of Residues | 5 |
Details | binding site for residue F2X C 1117 |
Chain | Residue |
C | LEU536 |
C | CYS539 |
C | GLU540 |
C | PHE583 |
C | DMS1114 |
Functional Information from SwissProt/UniProt
Chain | Residue | Details |
A | ASP18 |
Chain | Residue | Details |
A | GLU36 |
Chain | Residue | Details |
A | GLY68 |
Chain | Residue | Details |
A | ASN122 |
Chain | Residue | Details |
A | SER150 |
site_id | SWS_FT_FI6 |
Number of Residues | 1 |
Details | SITE: Essential for GTP hydrolysis => ECO:0000269|PubMed:18591255, ECO:0000269|PubMed:26272610, ECO:0000269|PubMed:8636225 |
Chain | Residue | Details |
A | LEU69 |
site_id | SWS_FT_FI7 |
Number of Residues | 1 |
Details | MOD_RES: N-acetylalanine => ECO:0000269|Ref.12, ECO:0007744|PubMed:19413330, ECO:0007744|PubMed:22223895, ECO:0007744|PubMed:22814378 |
Chain | Residue | Details |
A | ALA2 |
site_id | SWS_FT_FI8 |
Number of Residues | 1 |
Details | MOD_RES: Phosphothreonine => ECO:0007744|PubMed:23186163 |
Chain | Residue | Details |
A | THR24 |
site_id | SWS_FT_FI9 |
Number of Residues | 1 |
Details | MOD_RES: N6-acetyllysine => ECO:0000269|PubMed:31075303 |
Chain | Residue | Details |
A | LYS37 |
site_id | SWS_FT_FI10 |
Number of Residues | 2 |
Details | MOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861 |
Chain | Residue | Details |
A | LYS60 | |
A | LYS99 |
site_id | SWS_FT_FI11 |
Number of Residues | 1 |
Details | MOD_RES: N6-acetyllysine; alternate => ECO:0007744|PubMed:19608861 |
Chain | Residue | Details |
A | LYS71 |
site_id | SWS_FT_FI12 |
Number of Residues | 1 |
Details | MOD_RES: N6-acetyllysine => ECO:0000269|PubMed:29040603 |
Chain | Residue | Details |
A | LYS134 |
site_id | SWS_FT_FI13 |
Number of Residues | 1 |
Details | MOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P62827 |
Chain | Residue | Details |
A | LYS159 |
site_id | SWS_FT_FI14 |
Number of Residues | 1 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate |
Chain | Residue | Details |
A | LYS71 |
site_id | SWS_FT_FI15 |
Number of Residues | 2 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733 |
Chain | Residue | Details |
A | LYS152 |